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53-3947-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24414535 [Map]; Strand: w
      • AT5G60710.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-3947-1 - 5-prime edge 
    GGTGACCCAT AATCGAAAAA ATCAAACTTT ACCATTTTTG TAAGTAAAAA 
    TACACAAAAT TTGACACAAA ATATCAAACA ATGAAAGAAA AATTCAACCC 
    TAGAGATAAA AATCAAAACT TTATGTCAAT TTCAATGATT GTGACGAACC 
    CGCAATTCTT AAAAACGTAA AGGACAAACC TTTGATGAGG ATTTGCTCAT 
    GGAACGAGGT AATCGGAGAC CAGAGGAGGA AGGAGTCGGC GTTGATGGTC 
    TTTGAACAAT AACCGGAGAA AGTGAAACGG CGTCGTCGGA TCTTCTTGGA 
    GGAGAAGAAT CTTCAAGTGT GTTTGGTTAC CATCTGGTTT GGGATAAACC 
    ATTCTTTGTC TACTTCATTG TGTTAGATC

AT5G60710.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Computational Description
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR