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53-3956-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16542174 [Map]; Strand: w
      • AT4G34650.1 - [+] show detail - squalene synthase 2
        Distance: -203; Region: promoter
    Flanking Genome Sequence: 53-3956-1 - 5-prime edge 
    NTCGACNNAC TNACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC AGTAACATGT ATCACCGTGG CAAGCTTAAG 
    AGCAAGGCTA ATGGCGATTC TGTGGAAGTG CAAGGTATGC AAAGGCCGTG 
    GGGTCTATTG ATTTATTAAT AGGGCCATAT TTGTTGAATT ATAGCACATG 
    GCCTACCATT TTGTTCCCCA ACAAATCCTC CATTGTCGGC TTGTCATTGT 
    TTCAAACGAG TTCTGTTTTT TCTCCTCTGT TTCTAAAAAT GGGAAGCTTG 
    AGTACGATTT TGAGACATCC GGATGAGTTA TATCCGCTCT TGAAGTTGAA 
    ACTTGCGATT ACGAAAGCTC AGAAGCAGAT CCCACTTGAG CCACACTTAG 
    CTTTCTGTTA TTCAATTCTT CACAAAGTTT CTAAAAGCTT TTCTCTTGTT 
    ATTCAACAAC TTGGCACCGA GCTTCGTAAC GCCGTATGTT NTTTTTTNNT 
    TTCTATANAT ANCTANGTTA CATTTTNANT NNCAGCANTN TTTAAANCNT 
    TTCCTTGGTT TTTATAAGGG GGGGGGGTTC TACTTGGATN CCCCNACCNC 
    TNNATACNGT GGGTAAGNNC TCCANANCTN TAGTTTCCAT TNTTTAACCC 
    TTTNGANTTG ANGAGTCCTT NTTCNCCAAG NNTTNTNGTT TTTTAAATAC 
    CTNGNAGAAN NAAAAANGNG AGAACCANCC TNCCCCANNT TTTGGGCTNC 
    TCCGNAGGAN NACCCAAGGC NTNCCCNGGG GAAAATTAAA ANNTCCAAAN 
    CNTAANACCT TNCCCCCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16542169 [Map]; Strand: w
      • AT4G34650.1 - [+] show detail - squalene synthase 2
        Distance: -208; Region: promoter
    Flanking Genome Sequence: 53-3956-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTCCAACTAT GTTCTATTTT TGCATTTAAA TTGCTTGCCG CGTGCTACAC 
    ACTTAACGTT AAAAAGATAA ATCTAATCTT GATTCATGTT TTTGTTTTAT 
    ATACTTTGAA GAGACTTTTT TGCCGACCTA AAAAGAAAGA AGAGATTTCA 
    GTCTTCGATT GTCATTTTTC TTTCTTTCTT ATTGCATTTG GATTTTATCT 
    GGTTGTTGTT GGTAAAATTA ATCTTAAAAC ATGCCAAAAG AGAACGAAAG 
    AAGAAACGCA ACTAAACAAA GAAAGAACTT TAAACACAAG GAATAAAAAT 
    AGATGAACAA ATGCACGTTT AGACAACGAA GGTAGTAACT AAAATAGAAT 
    CCATGGTTTT AGACTAAACC ATGCTTAAAC TCTGTTTGTT CTGGAAACAA 
    TCTTGCTTAG GATTCAGTGG CGTGAATAAG AATCAACCTA GATTACTTCA 
    TCACTCAAAT TTGCTCTGAA CATCTTGAAT GATGGTGATA CAATCAGACT 
    CGCTTACATG GATCACTCAG TTTGCTCTGA GATATGCAAA GACTATGGCC 
    AGTAGAATCA CAACCATTAT AATCTGCATT TTCGGGTAGA ATATATAGAA 
    TATAAGTTTT ATGTATTTTT TTTAAAATGA GATACTTATA TGGAAAAGGG 
    AAACTATGTA ACTTACAAAG ACACTGGTTG GGTGGTCCTT TGTCATTAAC 
    ATAAGATTTT CTGAAGGAAG AGACACAATG ATTCAC

AT4G34650.1

Model type
Protein coding
Short Description
squalene synthase 2
Curator Summary
Encodes a protein with similarity to squalene synthase which catalyzes the first committed step in sterol biosynthesis. To date no experimental evidence exists that SQS2 functions as a squalene synthase and some experiments indicate it does not have this function.
Computational Description
squalene synthase 2 (SQS2); FUNCTIONS IN: farnesyl-diphosphate farnesyltransferase activity; INVOLVED IN: N-terminal protein myristoylation, sterol biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Farnesyl-diphosphate farnesyltransferase (InterPro:IPR006449), Squalene/phytoene synthase (InterPro:IPR002060); BEST Arabidopsis thaliana protein match is: squalene synthase 1 (TAIR:AT4G34640.1); Has 1176 Blast hits to 1175 proteins in 496 species: Archae - 34; Bacteria - 579; Metazoa - 114; Fungi - 168; Plants - 163; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR