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53-3965-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24379744 [Map]; Strand: w
      • AT5G60660.1 - [+] show detail - plasma membrane intrinsic protein 2;4
        Distance: -2755; Region: intergenic
      • AT5G60670.1 - [+] show detail - Ribosomal protein L11 family protein
        Distance: 1166; Region: intergenic
    Flanking Genome Sequence: 53-3965-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGCAG AAGACTTATG CAAACACCTA ACCGCACTCA 
    GTCTCACGAT TGCTCCCAAC AAGCCTTCAT GGACTACTGG TTCTTCTTCA 
    TCAAACAACT TCTCATAGAA GACTATACCG GACTCAGACC ACGGACCTCC 
    CGTCAATAGG TACATCATCT GGCACAAGTT CAACACCACA CAGTACATGT 
    TTTCAATTTG GTTTATTCAT GTTGGATCGA AACATTAATT TGAAATTTGG 
    ATAGAGTCAA AAGTTGGGGA CTCAACATTG ATGATACATG TCTCCTATGC 
    TGCTAAGCTA CATAATCACG AGATAATTCT TGCCTACTTC TCTGGCCTGC 
    ACTTGGGGTC TACACCACTC GATTGGTTCT CTGATACTCA CGTACTTTCA 
    TATTCTGCAA GAGCCAGATG CAAGGAAGCG CACTCTTCGA TTCTCATCGT 
    GTAACAAGCC TCCATTTATG AGAACTGGGA CGAGAAAAAT CGTTTGTAGC 
    CACCATTCCA CCAGCATGCC ACCAACACAC GAACGTATTG AAGTTTGTTG 
    ACATAAAGGT CAGAAACAGA GCACAGTCAC CACTGTGGTC CTTTAAATCC 
    CATTGGAGTC ATAACTCTTA AACTAAGAAG ATTTCAACAA TAATTGACAA 
    GAATGCAGTT GAGTGCTTTT GTTTGTATAT GAATCCCACT TGTTATGTTT 
    TTATCCAGTT TAATACTAAG TTCAGAAG

AT5G60660.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 2;4
Curator Summary
A member of the plasma membrane intrinsic protein subfamily PIP2.When expressed in yeast cells can conduct hydrogen peroxide into those cells.
Computational Description
plasma membrane intrinsic protein 2;4 (PIP2;4); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, hydrogen peroxide transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60670.1

Model type
Protein coding
Short Description
Ribosomal protein L11 family protein
Computational Description
Ribosomal protein L11 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11, C-terminal domain (InterPro:IPR020783), Ribosomal protein L11, N-terminal domain (InterPro:IPR020784), Ribosomal protein L11, conserved site (InterPro:IPR020785), Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: Ribosomal protein L11 family protein (TAIR:AT3G53430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR