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53-4004-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2612601 [Map]; Strand: c
      • AT3G08600.1 - [+] show detail - Protein of unknown function (DUF1191)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-4004-1 - 5-prime edge 
    NTGGANACAA CGGACANACC CNANTGCTTT NTTNTGCTTG CTTCNGNNTC 
    TGGAGCANNA NNAANTCCCN CCCGGGGCNA GTNNAAAGGT GGGAGACACA 
    GTAATAAAAA GTCGCCGTCA CNGTCTGAGT ANAAAAAGGG TAAAAAGGGG 
    AAATGGTGAA NANAANAACA AATCGAGGAA TGAGGGTTAA GGAGCAATGG 
    AGGAAGCTGA GGAGGAGGAG GAGGAGGANA GAGAATGAAT GGTCGCCGGT 
    GGAAAAGAGA GAGAGAGAGA AAGGAGAGAA GGAGAGAGCC AAAAGGACAA 
    AAAGGANAAN AANAGTGTTG TCGTCAGTCC CATTTGTTCA CAAAAAAAAA 
    AANNANCCNC CCNGTNNNTT NNNTTTTTTN NCCNTTTCCN CNTNANNAAA 
    AATTAAATNT TNGGNNGGTT TTTTTNNNTT NCTTTTCCNN CNANTNNTTT 
    NNNNNCTTGG GGGNTTTAAN TTNCCCCGAA ANAGNGGCCC NCCNNCCTTT 
    NNTGGGGNAA NNGGANNCNN NNTNNGNNTN TNCCCNATNT NNGNANCCGG 
    NNGNATNNTT TCCANCTTNG GTTTTGGNNT TNCNTTACCC TGGNCCNATT 
    TTTTNNANTT TAAACCACTT TTAATTTANT TTAAGGNTTT TTAANCCCAT 
    TTTTTAGGAC CTCACCTTTT TTTTNTTGGC CCNATAAAAA ATTGTTTTTT 
    ACCCTTTNAC CANCCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2612714 [Map]; Strand: c
      • AT3G08600.1 - [+] show detail - Protein of unknown function (DUF1191)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4004-1 - 3-prime edge 
    GTCTCCAGCT GCTGCTGCTT CTGTTTCTAT CTCTTCGTCT ACAAAAGCTC 
    TCTGCTCAAT CTTCTTCACC CAATGCTTCT TCTTCTTCTT CACTCGATGC 
    TCTTCTTCAA GATTACTCTT TTAGAGCCTT GCTTCGTCCT CGTACCGGCA 
    TTCTCTACGA GGCTACTACT GTTCCTTCCA ATTTGACTGG GATCAAACTC 
    GCTGCTATGA GACTCAGAAG CGGAAGCT

AT3G08600.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1191)
Computational Description
Protein of unknown function (DUF1191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1191) (TAIR:AT4G22900.1); Has 124 Blast hits to 124 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR