1. Home
  2. Mutant Lines
  3. 53-4008-1

53-4008-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24154955 [Map]; Strand: w
      • AT5G59990.2 - [+] show detail - CCT motif family protein
        Distance: -1871; Region: intergenic
      • AT5G60000.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 4376; Region: intergenic
    Flanking Genome Sequence: 53-4008-1 - 3-prime edge 
    TTNATGANGA CGGACGTNTG TAGGANGANC TGNNGGATGC TGTCCNNCTC 
    AGTAGCANGC GAACNAANTG GATCNTNCCN NNNCATTGAN TGCTTGCCNA 
    GGTNACGTGA NCANCNACCA NCCCNNNNCG TCGANNNNCC TNTGCCATTA 
    TANAATCATA TCTAGNNTAA ANNTTGGANT GGACCTGAAT TAGATNNATA 
    NGATCAATAT CATCTAGTAG NAATAATGNC GATATGTGNG TTAATTTTTG 
    TACTNAACAA ACACCANGAG TTGGGTTGAT ATTATGTATC CTCATTATGG 
    AGTGAGGCTT AAACAGGAAA TTATAAGTNG NNANGNTCTT AAATGAGTGA 
    TTATGTATTA TGTNTGANGA TGATGATGAC TNGAAGAGTA GGCCAATTTA 
    GTGACTGACT ACTACGTGTT NCTACAATAT ATTGGTATAT ATNNAGNGAT 
    NCTACTATNC GAATNTNGTT CTTGNAATGT AACCTAATCG NCAACAATAC 
    GTNCTANANA NANNAACAAT ANTTGANNTA CTTCNCCGTN NNGGGTAGCN 
    ATGTNTAACT TNNTTAGAGA TANTTNTNTN NGATNTTNNT ACCTNTANCG 
    NATTNGANTT NNAAACAGNA TANATTNTGG CTNTATTATA CCTNNNTNAN 
    NATNGGATTN GTAACNANTT TANCNATATC NTTTNCNNNA NCNANTTNNT 
    ANCCGNGTCT TNTCCTGGCT TANTNTNNGG TACCGNACNT AATACNNCGN 
    TGTAATGN

AT5G59990.2

Model type
Protein coding
Short Description
CCT motif family protein
Computational Description
CCT motif family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, stem, leaf whorl, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT5G41380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60000.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR