1. Home
  2. Mutant Lines
  3. 53-4052-1

53-4052-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10832064 [Map]; Strand: w
      • AT2G25450.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -409; Region: promoter
    Flanking Genome Sequence: 53-4052-1 - 5-prime edge 
    TATGTGATTA GTGTGTTTGT GTTCTTCAAA GATTGTAAAT TTGAATAGCT 
    TGGTTTTGTT TTCCTCTAAT AGACTGAGAT ATGTAGCTTA ATCTTTTCAA 
    GAGAGTGAAT AGTTTATGTG GTGATCACNT GTAGCNTTAG GATGTTTTGG 
    TATGGCTTTA GTGTTCACCG GTCTAGAAGT TCCACTGCAC ATGTTTGATA 
    TGGGTAAAGC TGTAAACTAT TAGGTTGAGA TATTTTAGAT AATTTATATA 
    CTATTAAAAT CGCAATATTA GATAAGAAAA TTGTGGTGGA CGTGTTTGAT 
    ATGTGTAAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10490643 [Map]; Strand: c
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-4052-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    CTGGAGACCA TCCAATCTTC ATCAACAAGG AGAGGAGCCG GAGACGCAGA 
    CACATGATCA GTGTTTGTAG CTGCGTAAGG AAAAACATCT TCCCTAAAAA 
    CAACATCACG AGAAACAAGA AATTCCTTCT TCTCCATATC AAACACTTTC 
    CAACCTTTTT GTGCGAAAGG ATAACCTATA AAAACACACA AACGGCTTCT 
    CTCCCCAAAT TTATCTTTAT CACGGGAAGC ACGATGAACA TAACACGCAG 
    AACCAAAGAC TCGCAACTGC TCATAATTTG GCTTGGAGTT ATGAAGAATT 
    TCGTAAGGAG AGAGTCCATT ATGAAGTGAT GTAGGAGTGC GATTGATTAA 
    GTATGCCGCC GTTAGAACCG CTTCTCCCCA AAATTGTATT GGAAGGCTTT 
    CTTGAAACAA TATTGCCCTT GCGACATTAA GGATATGCCG GTGTTTACGC 
    TCTACACGAC CATTTTGTTG CGGAGTCCCG ACACACGAAG TTTGGTGAAC 
    AATCCCATGT TCCCGAAAGT AAGAGGCAAG ACACATAAAC TCTGTCCCAT 
    TGTCACTACG TAATACTTTG ACAGACTTAC CAAACTGTTT TTCAGTATAT 
    ACCAAGAAAT TAGTGAGTAC AGTGCGAACT TCAGATTTTG CCAAGAAGTA 
    GATACGTCCA AACGGCTCGA GAAAAATCAT CTACTATTGT CAAGAAATAG 
    ACTGCACCAC AAGATGACGG GACACGATAT GGTCCCCA

AT2G24660.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT2G25450.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary
encodes a protein whose sequence is similar to ACC oxidase
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G30830.1); Has 7865 Blast hits to 7837 proteins in 966 species: Archae - 0; Bacteria - 1060; Metazoa - 82; Fungi - 676; Plants - 4824; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).
Link
InterPro Scan - TAIR