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53-4071-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25098041 [Map]; Strand: w
      • AT5G62520.1 - [+] show detail - similar to RCD one 5
        Distance: 0; Region: exon1 (5UTR)
      • AT5G62520.2 - [+] show detail - similar to RCD one 5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-4071-1 - 5-prime edge
    CTTGGACCTC AAGTTCTTTT CCTCTCTCAA GTAACAAAAT ACTAATTCAA 
    AAGCTTTATA AAGTTTCTTT TCTCATTCGG TTCTAAAGTT CCTATTTTTC
    AATGGATTAC GTGAGAACCC AAGTCGAAGC CTGTTTTTGA TGATTCTGAG
    CAAGATGGAT CAACCATCTC TGAATCTGGA AGCTGCGATT CTTCTTCTGA
    TCGATCTTTT GCTGACGAGC TTGGGCTTAT GGAGTTGCTT GAAGGAGATA
    AAGCTCATGA TTTGATCTAT CGTAATTGTA AATCTGGTCT TGGTGATCAA
    TGTCAGATTC TCTCTGTTCT TAGAAACGGA TTTAGGAACG TTGGATCTCG
    TGCAAAGCTC AAGACTTTTC AGGTTTTTCA AGAGGCGGTG CAGATGAAAC
    ACGGTGGAGA CGGTGGAGCT AAGGTGAAAT ACGGTTGGTG CTCTGTTTCG
    AAACATGAGC TTAAAACGAT TTTTGAGTAT GGGTTTAGCG AGCCGCTGAG
    GAATGATGGA TCTTTTGGCC GTGGATTGTA TCTCTCGCCG GATAATTCTC
    CTCTTGATTG GTAAGTTTCT CTAAATCTCT AAAAGGNTCA ATTTTTCGAA
    ATTCATTGGN CTCAAATCTC ATTTTTGGGG GTTNGNNTGN NNGATTANNT
    NGAAGGATNC AGCTTCNNAA TCANAANATG GGGATGAGAN TCTTGNNGCN
    TTGNANAGNN CTNCTTGGNA AATN

AT5G62520.1

Model type
Protein coding
Short Description
similar to RCD one 5
Curator Summary
Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.
Computational Description
similar to RCD one 5 (SRO5); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 4 (TAIR:AT3G47720.1); Has 162 Blast hits to 153 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62520.2

Model type
Protein coding
Short Description
similar to RCD one 5
Curator Summary
Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.
Computational Description
similar to RCD one 5 (SRO5); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: similar to RCD one 4 (TAIR:AT3G47720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR