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Mutant Lines
53-4077-1

53-4077-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 27095911 [Map]; Strand: c
- AT1G71970.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: 1884; Region: intergenic
- AT1G71980.1 - [+] show detail - Protease-associated (PA) RING/U-box zinc finger family protein
  Distance: -1992; Region: intergenic

TCTATTGTTT TAACTATATG GCGTTATAAT ATTCAGACAT AAGTCAATAA 
TGTAAAAGCA AACACGCGAA TACATTAGCA GACAAATGAC AATGATGAAA 
GTAATGTTCA TATTAAATTA TGTCTAACAA TGTTATTAGA GAATTGGTCA 
TCATTAATAT TCCACGTTTT TTTAGGTTCT TTTCGCTCCC CACTAAATTC 
CTCTCGGTGC TCCTGCTCCT GCTCCAACTC CAAACTTAGT TCCAACGAAA 
ACAGAAACCT GAAAAATAAA TTCTTAGCAA ATTTAACTCT CTCTTTTTTT 
CATTATATTT TTTTGTTTCA AATTCATTTT TTTGTATAAA TACCCCATTA 
TCGTAGGTAT TTCTTTTGTA TTTATTTAAA TGTTTCCATT GCAAAAAAAA 
ANCNAANCAA AANGGAATTT TAAATTTNTT ANCGTAAAAA TAATCNATAN 
CNGGCAATNG TAAGGGGGGG GNGTTTGCAA NTTNACTNCA ANCCTTGCAN 
TANANANCAN TTTGATNGAT CCAAATCCGG TTTAAANTCC AAAANGAANA 
TGAATTGGAA CAATNTTGGG GCAAATACTA TNTTNTTTTC CAATACATTG 
CAAACTGATN TCACAAGTCT TAAGTAAACC AANACAGCAA CAGGTNCAAA 
CCTNTGGGAA TAAGTTCCCA GCCTGAAGTT TTGACATATG

3 prime edge [+] show sequence

Chromosome: 1; Position: 27098515 [Map]; Strand: c
- AT1G71980.1 - [+] show detail - Protease-associated (PA) RING/U-box zinc finger family protein
  Distance: 0; Region: exon2 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
CAGTGGTTTA TGTGGCTGAG CCTCTTGACG CTTGTCAAAA TCTTATGAAT 
AAACCAGAAC AGAGCTCCAA TGAAACTTCT CCTTTTGTGT TGATTGTTAG 
AGGAGGCTGT AGTTTTGAAG AGAAAGTTAG AAAAGCTCAG AGAGCNTGGT 
TTCAAAGCTG CTATTATCTA TGACAATGAA GACCGTGGAA CATTGATAGC 
AAGTATGAAA ATTTATGTCT TGATCTTGTG ATTCTGTTGT TTCTACATTT 
TGCCTGAAAG TTTTGAGATT TGCAGTGGCA GGTAACTCTG GAGGTATAAG 
GATTCATGCG GTCTTTGTTA CGAAAGAAAC GGGAGAAGTT TTAAAGGAGT 
ATGCGGGTTT CCCCGATACG AAAGTTTGGT TGATCCCAAG TTTTGAGAAC 
TCGGCGTGGT CTATTATGGC GGTTTCGTTT ATCTCGCTGC TTGCAATGTC 
GGCTGTTCTC GCTACTTGTT TCTTTGTGCG TAGGCATCGA ATAAGAAGGC 
GGACATCTCG GTCCTCTCGA GTGCGCGAGT TTCACGGTAT GAGCCGCCGC 
TTGGTGAAAG CAATGCCGAG TCTTATATTC AGTTCGTTTC ATGAAGATAA 
CACTACTGCA TTCACTTGTG CTATTTGCCT TGAAGACTAC ACTGTTGGAG 
ACAAGCTCAG GCTCTTACCT TGCTGTCACA GTGAGTACAT TGTATACAAA 
ATCCTGTAAC T

AT1G71970.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22680.1); Has 58 Blast hits to 58 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G71980.1

Model type: Protein coding
Short Description: Protease-associated (PA) RING/U-box zinc finger family protein
Computational Description: Protease-associated (PA) RING/U-box zinc finger family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G22670.1); Has 15658 Blast hits to 9675 proteins in 411 species: Archae - 0; Bacteria - 271; Metazoa - 3014; Fungi - 1211; Plants - 4865; Viruses - 29; Other Eukaryotes - 6268 (source: NCBI BLink).
Link: InterPro Scan - TAIR