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53-4129-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8833107 [Map]; Strand: c
      • AT5G25410.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 53-4129-1 - 5-prime edge 
    CCTCCAACTC CCACCATATT TGCACCATTA CCTATTAGGT TAAATAATTC 
    TTTTGGCCAA TATCCGACAT CTATGTTAGG TGCATTTGCT ATCAGTTTTG 
    TAATCCACCA GTTTCCTGTT TGTTTATCCT TTTTGTGTAT AAGAAAATAA 
    TCATAATAAA AAAATTAAAA ATTGAAGAAT GAAATAGCAT AAAATATTTA 
    AAAATGAAAA ACATAAAATA TTTAAATCTT GAAAAATTAC CTGATGGATG 
    GAGTAATGCA ACAAATCTTC CTTTGGCTGG TCCAAGGGCT GGGCTATGGG 
    AACCTCCTGT GATACTTGAA CAAACCCTGG ACATGCCGTA TTATAACATC 
    CATTTCCATT TTCACCCTAG AAAAATTATA TTTAAAATTT ACATGATATT 
    GGATTTAACG ATTTTTGCTT ATATATAAAC CATAAATAAT TTCTTTCACA 
    TGCACACCTT CCAAAATCCA TATGACCAAA CACCTCCATC GCCAAATATA 
    CTTGGATTTA TCTAAAAAAA AAATTCGATN TACTTTAANA CTNTACCTAN 
    ANAATTAATG AGTTGATAAA GCAAACAAAA AAAACAATNC AAAAATGTAA 
    AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8833223 [Map]; Strand: c
      • AT5G25410.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: 0; Region: exon7 (CDS)
      • AT5G25415.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -983; Region: promoter
    Flanking Genome Sequence: 53-4129-1 - 3-prime edge 
    GTTGGAGGTG CAGTTCAAGC TTCTCATCAA GGTCCAAGTC CTCCGATGGG 
    TAATGGTAAA TTTCCGATTG GAGACCCAAA GGAATCAGCA ATGTTTACAA 
    ATATTGAAGT CTTGAATTCC AACTATGAAC AACGTCGAAT CGATTCTTTT 
    CCTATGGAGA AGTTGCTAGA TAGCCCCAAA TGTTATGGAA TAAATACCGA 
    TAAAATAAAA CTACTCGGTT TTGCTTTTAA TTATGGTGGT GCGGGAGGAG 
    AATTTTGTGG AGTTTGACAT TTGCCAATGT AATCTTTTTA AATCGCCATT 
    TAATAAACTT ATTCTAAATT AATAAATATG AAATTGTTAT ATATACAGTT 
    CTCTTAGCGT AGGGTGAATG TGAGACCAGA TAAGTGTTAT AATGAGAAAC 
    ATAAATGTTT GAGCTGAAGT GAAGTCCTAA TCTACTGAGA AGTATAAATA 
    GGTCTTTAGG TCATTGAGAG AGAGTGCGAG ACATTGAGAG TGTGAGAGGT 
    GTTAAGAGAG AAAGCTATTC ATAGTATAAA CTTGTATTAG TTGTTCTGTG 
    AGTGATAACA NAGTANTGCA NAGCATCCTA AGTACTANTG AAGGATATTA 
    NGTGTATTGC TTGTANACTC TTGTTGTAAA ACACCATCTG TTTTTANTGG 
    ATTCCNANGA NAGTTTNNGN CCNACNTNNC TNCCCTNNNN GGANTGAACT 
    GGGTAAACAA ANNNNNNNGN GNNNTNTGNN NNGN

AT5G25410.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G60380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25415.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G25410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR