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53-4132-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16612600 [Map]; Strand: w
      • AT5G41530.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-r...
        Distance: 512; Region: intergenic
      • AT5G41540.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 59; Region: intergenic
    Flanking Genome Sequence: 53-4132-1 - 5-prime edge 
    GTTGTAGCAA AACCAAACAT AGTTAGATCT TTCAAATTGT AATGCAGGTT 
    CCATCCTCCC CAGACCATGC TTCTTAAGAC AAGTCCAACA ACTTGTATAT 
    TTACTGCTTT TGATGTTTTC ATCTTCTGCT TCATAGTCTC CATCTCCAGC 
    ATTCGCGGCT ACTACTCTCA GCATCAAAGT AGTCCTCTTC GCTGCTGCTG 
    CTACTCTCAA AATCAAAATA TTCCTCTTCC TTGCTGCTAC TTTCAGCATC 
    AAAGTATTCC TCTTCGCTGC TGCTGCTGCT ACTCTCAGCT TCCTCCTTAA 
    AGATCTGTAC ACCACACTCA ATGATCTTGT GCTTATCCCT GCAGCTGAAT 
    TTAAACAGAA TCTCGCTTGT ACTCACATCT ACGCCTATTT TTTCTGAAAA 
    CAAGTCACCA TAAAATATAA ACAGATGTTC TGTTCGAATT TTAGACGACT 
    CTAGAATCAC TACCCGGTGA TAGAATTTGT TAATTTGGAC ACCTCCTTTG 
    ATTCTTAGAC GACATGTTAT ATCATTAGTT GGGAAGTCTT CGATTGGCGA 
    AAAGAGAAGG CAAGCCTTGA ATCTTGAGGA CACCGAGAAA GTCCCCGCAA 
    CTGGAGCCAG AGGGATGGTT ATGGAGTTTC CTGTAGCTTT GTGAGTGAAC 
    TCCGCANGGA CTTTTTTGNC AGGTAACCAT ATATACCCTT CACCCTTTGT 
    TGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16612484 [Map]; Strand: w
      • AT5G41530.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-r...
        Distance: 396; Region: intergenic
      • AT5G41540.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 175; Region: intergenic
    Flanking Genome Sequence: 53-4132-1 - 3-prime edge 
    GCTACAACCT ATGATTTGGA AGCTGACACT AGGACAATGA GGACAAGATA 
    ATTGACTGTG GTTTGCAGAT ATATTGACAA TTTCATACAG GTCACAGGAT 
    TTTTGGTCCG GGAAACAAAA CAGAACCTCC ATTATATTTA CNGGATTGTT 
    AGTGTCTTTG AATATTTCTG ATTATCCAAA TCTGTAGAGA GATTGGAATA 
    CGTGATCCTA GATTCAAATC GTTTTGAATT GTCTCCTCTC TTAAATCTTT 
    ACGTGTTTTT GATTTCAATG TAATTTAATA AGGAAACATT GTTATATTCA 
    ATAGATGGCT TATTCAGAAC CATTGTAACT CTGGGATAAC TTCTCTTTTT 
    CTGTGAAACT GACTGTAGTA GCCAACACAA CAAATAAAAG ACAGTAAAAC 
    AAAAGCTGTG AAGTTCTCAT CCATTAAACT TTAAAAATAA GCCACATTCT 
    ATTAGGATC

AT5G41530.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related (TAIR:AT5G14280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41540.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR