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53-4150-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10989905 [Map]; Strand: w
      • AT1G30860.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -401; Region: promoter
    Flanking Genome Sequence: 53-4150-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAT GCACTTTCTG GATTTTATGC CACATCATAA 
    ATCAAATTGA AGAACTAAAG ATAACAAACA ATTTTAAATT GTATAACTGA 
    CAGGAACAAA AACTTTTAAG CAAAGTAAAA ATAATTTAAT TAGAGAAAAT 
    TAGATGTTCA ACCCAAGTTT CATGTAGTGT GCGATTTTAT TGTAGTGTGG 
    TCAATAGGCC CAGGCATAGT GGTCAATGTC GTGCTTGGGT TAGTCGAATA 
    GAGAGAGAAC TTAGGACGAG TTGTGATTTG TGACTCTTAT AAAACGATTT 
    AAGAAAAAAT AGTCTCTATA CAAAATAACG ATAATTGAAA CCAATAATAA 
    GGTTCACAAC CGATCATTTT CGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10989905 [Map]; Strand: w
      • AT1G30860.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -401; Region: promoter
    Flanking Genome Sequence: 53-4150-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GTGCATGGTT CCCACTCGAC AACGGCTAAA TTCCTCAACG GCTCCTTTTT 
    GACTCTAGCA TATTTAGGAG CCTTAATTAT TAAATAATTT AATCACCCTT 
    TAATTAGTAT AACAATCCAA TGTTAATTTT TTCATGCATT ACACAATTAA 
    ATGCTTTTAC CAGTATAATG ACATGTGTTA TACAATATCT TTCAAATTCA 
    ATTTTGTCCA AAATTATAAG TAGCTTTTTT ATTTTTCTAT AACAATTTAT 
    CACTTTTGGC CACATAAGGC TTTTCTTTCT CTGTATTCTT ACACCTCATT 
    CTTTATTGCC TTGTTTTACA GACACGTTCC CCAGTTTAAG GGACAAAACA 
    GAGCCATTTT AGGACTCTTA ACATTTATAA GTCCTCTTAC TAAATAGATA 
    AGCACAAATA CTGTTTGGTT CTGTTTTGCT TCTTCATCAT CATCGTATCT 
    CCACCGTTTG TTTGTTGTTG TTCTGTTTCT TTAACAGGAA AAAAAAACAG 
    AGAGAAAAAT CTGTCTCTTC ACTAACACAA ATCCATTTTC TCTTCTTCTT 
    GTAGAGAGAC AGAGAAAACA GAGTTGTCCT CTAACTTCTT TCGATCGATT 
    CAAAAACTCT AATGATTATT TGATTTTATG TTCNNTTNGG TCGATTCTTA 
    AATCGTAAAA AAAGGGNGTC TTCTCCTCAN AAATTCGGGT TAATCTTAAG 
    ANATCGNAAC CAAACGCTGG CGTTTTTCAA AAAAT

AT1G30860.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: stem, stamen, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G34920.1); Has 4912 Blast hits to 4241 proteins in 362 species: Archae - 9; Bacteria - 172; Metazoa - 2090; Fungi - 292; Plants - 512; Viruses - 97; Other Eukaryotes - 1740 (source: NCBI BLink).
Link
InterPro Scan - TAIR