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53-4166-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27209983 [Map]; Strand: c
      • AT1G72270.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR0...
        Distance: 0; Region: exon1 (CDS)
      • AT1G72270.2 - [+] show detail - LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, seed; EX...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4166-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAGG AGACTCGGAG TTTCGAAGGA GAAGCATATA 
    GAGAGTCGAA GAGGATCAGA GACGCTATCG CTGAGAACCT AAGCCGAGTG 
    AGTTCACTAA GATGAAATCG AAAAGTTGCA AGAAGCGTTT TTGTTTGTTT 
    GTTTTAGCCT TATCTTGTAA ATTGTGGTTT CTGCTGTTTT CTTTTGTGTG 
    TACAATGTAC ATCTGTTTCA GTATGCAGTT TACGGCTTAG AATGTGAACC 
    AGATAATTTA ATATGAACGT ATAATTTTTT GTAGCTGTTC ACTTCAGGTA 
    TTGGATTACT CTCTTCTATT CTCAATCTTT TGCTTTGGAT TTTGATCATG 
    AATTTGACTT ACGCGGTTTT TAAGTACATT TTCTTGTTTT GTTTCAATGA 
    GACGAATACT TTGTCCAAAG AATAGCAAAA ATGAAAGGAA TAATTAAAGT 
    GTATTGTGAT TTGGACTTCA CAGTTCACAT GGCCCAATCA CAAAAGGTTT 
    CGGCTCGGCC CATTGTGAGA GCACTCGGTT AATGTCAAAC CGGTTGGAGG 
    CAAAATAAAT TGAATGGCAT ACATATATGA CCTACTACGT TCAGCTCTGA 
    CACGACACAA GTACCCGACT TCTTGTCCTA GAGGAAGCTC TTTTTAATGG 
    TGGAATCAAC ATCAGACTTG GAAGATCAAG GTACGAATTA AGATGTTTAG 
    AAGATTTCTG TTTGGTTTTT TCCTACCGAG AAGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27210000 [Map]; Strand: c
      • AT1G72270.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR0...
        Distance: 0; Region: exon1 (CDS)
      • AT1G72270.2 - [+] show detail - LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, seed; EX...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4166-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTC 
    ATCATCTTTT CTCATCTCAC CATTATCACC AGCTTCACAA CCATTCACAC 
    ATTCCTCCAC TGAATCATCA TCATCACCAG AATTACCAT

AT1G72270.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G72270.2

Model type
Protein coding
Computational Description
LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1).
Link
InterPro Scan - TAIR