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53-4177-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25514096 [Map]; Strand: w
      • AT5G63750.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4177-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA CAGAGACACA CCACGTTGAA GCCATAGTCT 
    TCCTGATCAG CACCATCATG ATTCTTCTGA TGAAACTCAA TGACGTAATT 
    GCAATCCTGT GCAGGACAGT ATTTGATCTC CAATACCTTG TTTCCCTCAA 
    TGTAAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25514094 [Map]; Strand: w
      • AT5G63750.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4177-1 - 3-prime edge 
    AAAAAGGAAA CGGTNGAAGG TTTTTNACCG ACNGTTCCCG ACNGTTTTNN 
    TCGNNTNNTT TNTTNTGNTG GAGATGCNTG CTNGAGTNNN ACAAACCAGN 
    GACCTGCANC ANCNCGTNTG ATNGGTNGTT TCNANACCTA ANTAGCTTAT 
    CGAAGGANTC AGGNGAAAAG CCNTNGACCC TNTCCTCGTT CNAANCCANA 
    NAAAANACTT ACCNTNTNTC CTCGATNAAN GCCNCCAAAA ANGTTNGCCC 
    TNNTNGTCTT CGTCCTGCGG ATCTNGGTNC TAAACANTAC CTCCGGTTNT 
    TGACTTGNGC CTGCAGGTAA NAACCCCTNT TTTGCAAATT AAATTTNTNT 
    NTTNGAAGCA TTATNGATCA TNCTAATTNG NGNGTTTCTN GATCTANCGG 
    NCGTTTNTGC TGNAAGTGTN TGCANCCANA GGAANCCCAC AAAACGGANT 
    CAGGATTNTA TAAATTCTGT AANGTATCGA TGACNTTCGA GGGAANANCN 
    CCCAANACAC TCGNGGGAAN AGCANANCCG GANANTT

AT5G63750.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
ARIADNE 13 (ARI13); FUNCTIONS IN: zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT5G63730.1); Has 1670 Blast hits to 1662 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 716; Fungi - 141; Plants - 537; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).
Link
InterPro Scan - TAIR