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Mutant Lines
53-4195-1

53-4195-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 2; Position: 19130309 [Map]; Strand: w
- AT2G46580.1 - [+] show detail - Pyridoxamine 5'-phosphate oxidase family protein
  Distance: 0; Region: exon2 (CDS)

GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCAC GATTCGAAGG CCGTCCATTT AAACCAATCG 
TTGCCTGAAA ACATACACAC GCAAAAACAT CAACAACATC TCCCGATGAA 
GAAAAATTCA GCAAAAATCA AAAAGAAGAG ACATACNGAG CNTGAACATA 
AGAAGAGTGG CTTAGATGAG AATTGGCTTC AATGGCGCCA AAGAGAAGCT 
GCTTCCATGG TGCTACATGT GTTCCCATCC TCTTCGTCAC TTACTTCTGA 
TAGACCCGGA TTGGGTTTGT TCAAACAATG ATAGTTTAAT TCATTGATCT 
TTCGATCGAT TGTTTACAGA GAAACCAAAG ACAAAGAGAA TGAATACAAG 
CAAGCTATTA AAGAAATAGG CCTTAAACGA GATACTAATT ATGAGGCCCA 
TTAGGCCTTA TACTTAGTTG AAGAAATTTG AGGAAGAAGA TAAATGTTTT 
TTTTTTNNAN NATNTTTCAA TAAANGCTTN CAAAGANCAN GANNTAATTC 
CAANGNGGNN NCCCTTTTTN GGGCTTAAAA NATAANCTAN CNACNAGGCC 
CNCCCGGCCC CNATAATCTC ATTAGTNTAA NCTNTNCTGG NTAGTNTTAG 
TTANATCATT NTTCCNCCCC ACTTTTAAAC AATGGCGTTT TCTGTTTTTG 
ATAGNNTTAG GCCTTTAACG NGATGACTAA ATNTNTTTTG GGCCACTTTA 
TNTTGANCCC AAAATTTTNT GAAC

3 prime edge [+] show sequence

Chromosome: 2; Position: 19137377 [Map]; Strand: c
- AT2G46610.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon4 (CDS)
- AT2G46610.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon4 (CDS)

TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCACC 
ATATCACGCT CTCTTGTGCG AATAGGGTCA AAGTTGATGA CAAAGAGTGT 
CTTTGTAGGC CTCTGATTCG AGACTGCCTT TCCATCACGA GGCTTCCCAC 
GTTCACCCTG AAAGTCCTGA AAGCCAAAAG AAACTTAGAG CTCTCTGAAA 
ATATCAGAGC ATAAGATTAA TTTTTAAAAA GAAGAAAAAG ATACCTTGGC 
CCATTCAACT GATAACTTGC GTCGCTCATA TCCAAAAGTG GTATTGTCAG 
TCCTACGGAT TGCATCTTCA GCATCGCGCT CATCCTCAAA ATACACAAAA 
GCATAACCTG CAAGAAAACA AAAACTCAAG ATAAGAAGAG CGAGCATATA 
CATTGACAAA CTGTTTCAGC CCACAGAAAT TGCAATGCAG GAGTTAGTCG 
ATTAGAAGAC ACCTTTTCAC CTAGAGAAAG ACAAAAACTA AATAAATATA 
CAACACCTGC ATCAATGTGA AGGCTGGTGT ACATAAGAAG TAGNAGGCGT 
TCGATGTAGA GTAGTAAATA AAGATGTAGA TGTGCAGTTG TAGAATGTAG 
CCTATGAAAA AGGTAATAAA ATCCAAATTT CTGTTCAATT CTGAATGGTT 
GCTAAGCCTT GCTTCACCAT TCTGACATGA AAAGGCGTGA AGAAACAAGG 
CAATAGATTG TAGGCTCAGC GAAGATTGTG GGCACAACAT CATACCGGTA 
GGCATGAGAA AATGTAGGAA TCTATTTGCA GGAAG

AT2G46580.1

Model type: Protein coding
Short Description: Pyridoxamine 5'-phosphate oxidase family protein
Computational Description: Pyridoxamine 5'-phosphate oxidase family protein; FUNCTIONS IN: FMN binding, pyridoxamine-phosphate oxidase activity; INVOLVED IN: oxidation reduction, pyridoxine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxamine 5'-phosphate oxidase (InterPro:IPR000659), FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); Has 1290 Blast hits to 1290 proteins in 309 species: Archae - 0; Bacteria - 510; Metazoa - 56; Fungi - 60; Plants - 40; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G46610.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G61860.1); Has 503542 Blast hits to 501535 proteins in 22149 species: Archae - 10994; Bacteria - 307576; Metazoa - 94329; Fungi - 13527; Plants - 29141; Viruses - 36248; Other Eukaryotes - 11727 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G46610.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G61860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR