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53-4199-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17337196 [Map]; Strand: w
      • AT2G41560.1 - [+] show detail - autoinhibited Ca(2+)-ATPase, isoform 4
        Distance: 0; Region: exon1 (5UTR)
      • AT2G41570.1 - [+] show detail - transposable element gene
        Distance: -541; Region: promoter
    Flanking Genome Sequence: 53-4199-1 - 5-prime edge 
    CTTCCAGCGA CGGATTCTTA GCCTCCACCT CGAAATCCCT TAGCAAGTTC 
    GACATTTCTC ACACTCTCAC TACCACTCTC TGTTTTCACA GAGACAAACT 
    TCGCCGGCGC GAAGGCAGCT GAGAGAGAGA GAGAGAGGAT TGAGCAACGG 
    ATTGGTGTGA GAGTTGCTTT TTATGGATTA CCCAAACCCG ACCCGAATTA 
    CTCGGATTTT ATGCTCGGAT AGGGCCCATT CATTCAAATT TCATTTTCGT 
    CTCATTCGGA TAATTAGTAG GCAACCAAAT CAAATGATCC GACCCAGACG 
    AATATTATTA GGTCCATAAA CATGCTCTTT TTTTTTTTNC CNTNGGGGAN 
    NNCTTTGGGG GTTTTAAANN AAAACCCCNA AAAATTNNNN TTTTTTTTNN 
    NGNTTCCCNN NNNGGGNNGG NCCCGNTANC CNTTTTNTTT TCCCNNNAAA 
    NCGGNTTTTT TTTTNCNAAA AAANTTTTNN NAANAAAAGT TTTTTTNANG 
    NNAAAANNAA NTTTNTTTAA NCCNGGGGCC CCCAAATTTT GGGCCCCNNN 
    NNTTGNCCTT TTTTTGGGNN NAAAANTTTT TTTTANGGGN TTTNCCNNCT 
    TTTAANCCCT TCGGGAAAAN NAANAAAAAA CTTTTTGGGG NANNTTTTGT 
    TTTCCAAAAA AAANNCCCTT NAGGGGGGGG GNTTTNNNAA NGGNNNNNCC 
    CN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17337080 [Map]; Strand: w
      • AT2G41560.1 - [+] show detail - autoinhibited Ca(2+)-ATPase, isoform 4
        Distance: 0; Region: exon1 (CDS)
      • AT2G41570.1 - [+] show detail - transposable element gene
        Distance: -657; Region: promoter
    Flanking Genome Sequence: 53-4199-1 - 3-prime edge 
    GCTGGAAGCG CGTCAAAGAT GGAGGTCGTC CGTGTCTATC GTTAAGAACC 
    GTACTCGTCG TTTCCGTAAC ATTCGGGATC TCGATAAGCT CGCTGACTAC 
    GAGAACAAGA AGCACCAGAT CCAGGTTCCT ATTTCTTTGG TTTCTCTATC 
    TCTATTATTC AGTTTTTTTT TTTNGCNGGN AGTNTNATTT NNATTTTNTG 
    GGTNAAANGG NTTTNTAAAA AATTNTTCNT AGGGANCCTN AAAAGTNAAA 
    NCCTTTNNAA AAAGGANTNG ANAAGGGNNG NCCCTGTNAA GCTNCCAGCC 
    GGGNCCNNAA NCCCCCNGGG CCCCTTNANN NTTNGNNTNT NNTAACANGG 
    AANCCCTNNT TAGGCTTNTA AAANCGGGNT TGGGNTNAAG NTTTTNTNCN 
    NNNNNNTNCC CNTGAANTNN NNNNNTTTTN NNNTCCAAAA AACTAACCAN 
    CCTTTTTTTT GNTTTTNAAA NNTNCCANCC CGGGCCGNNN ACCCCCCGNN 
    NNNNNT

AT2G41560.1

Model type
Protein coding
Short Description
autoinhibited Ca(2+)-ATPase, isoform 4
Curator Summary
encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole.
Computational Description
"autoinhibited Ca(2+)-ATPase, isoform 4" (ACA4); FUNCTIONS IN: calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: autoinhibited Ca2+-ATPase 11 (TAIR:AT3G57330.1); Has 45699 Blast hits to 34603 proteins in 3211 species: Archae - 845; Bacteria - 31242; Metazoa - 4073; Fungi - 2705; Plants - 2048; Viruses - 3; Other Eukaryotes - 4783 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41570.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16690.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1)
Link
InterPro Scan - TAIR