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Mutant Lines
53-4222-1

53-4222-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17903671 [Map]; Strand: w
- AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: 0; Region: intron2 (CDS)
- AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: 0; Region: intron2 (CDS)
- AT4G38170.1 - [+] show detail - FAR1-related sequence 9
  Distance: -887; Region: promoter

GGGATAAACT ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATATTA 
TCCATANAGT GGTTCCTGTG TTGTTCAGGT ATTCAACCTG CCNTCAAAAT 
GGGATGTATA TGTNGTTGGA TAAAGTCAGN GTCNTTATTG NCCTGCGTGA 
TTATTGCAGC AACCGACAAG CAAAAGAAGT GTCTGCTTAG CCTAACNTGC 
AGAACAGAAT ATGCAGCAAT GCAGTCTAGC TGCTTGTCGG AAGTATGGGT 
GGGTAAAAAG CCCCTAGTCA TTCCACAAAT ATGGAGGCCC CTAGTCAAAG 
GTCACATTTG ATGACAAAGA GATGGTTGAT CGTTCTCTGC CTATATAGTA 
TGTACCTGTC ATATAAAAAT GAGACCCCCT CTGCTCTCTC TTTTGGATGA 
GATCAACCGT ATTTTAAACC GGCCAAACTT GAAAGTTTTT TTTTGCTTCA 
AATGCTCTTT CAAGTAGAGT CCCTTTTGTT ATTCACGTTT TGTAGCTATT 
CTATTCTCTC TCCTTGGACT GGTGTTTTTG TTCTTCGGTT TTTCCGATCA 
AAGTTGAATC AAGAAGAAGT TCGATATGTC CGTCTTCGCT GTTTCTTGTG 
GTTGCTTGTT GGGCTTCTGT GCCTTTTTGA TTTTTTCTAT TTTGGGCCTG 
TGTGCCATGT TTTCGGCATT TCTGCTTTGT TGGGCCTACG TGCCTTTTCG 
AGCCTTGTAG TTTTNTTTGT TTNAAGCACT CAATANTTGT TTGTNGACGG 
ACCAAAAACT CAAATGGCCC CACTTAATTT ATTTT

3 prime edge [+] show sequence

Chromosome: 4; Position: 17903640 [Map]; Strand: w
- AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: 0; Region: intron2 (CDS)
- AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
  Distance: 0; Region: intron2 (CDS)
- AT4G38170.1 - [+] show detail - FAR1-related sequence 9
  Distance: -918; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TAGGATGCAC 
TTGATCGGGC CATGGTGGTG GTTCTATCAT AATTAGGTAA TTTTCAAAAG 
GAAGTGTAGA ATCCATGATA AACGAATGCA TAGTGAATAA TCGATGATAT 
CTGGAAGAAA ACACTCTATT GATATCACAA TCACTCAAGG TAAAGCTCGT 
GCTAGAAATT GGTGCACAAG CTGAAAACAG CTTACAGAGA GAGCCTGATG 
AAGGAAAAAA CTAGAGAGAG ATATAAAAGC TAGGAGCNTT GCAGTTACCT 
CCGAAAAGCC AAACTTCTCA TGGAATTTCT TTGTGTTACA GTCCAGCATT 
TCTCTAAGGC TGCAGTCAAT GTTGTTCTTT TTGACAAGTT TAAACCTCGA 
TTCGACCTTC TTCTTCAATC CATGGTGAAA GAATT

AT4G38160.2

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.3

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link: InterPro Scan - TAIR

AT4G38170.1

Model type: Protein coding
Short Description: FAR1-related sequence 9
Computational Description: FAR1-related sequence 9 (FRS9); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PMZ-type (InterPro:IPR006564), MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 5 (TAIR:AT4G38180.1); Has 1073 Blast hits to 1051 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1067; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR