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53-4249-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17927243 [Map]; Strand: w
      • AT4G38225.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT4G38225.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT4G38225.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4249-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CCAGGAAGCT CCCTCTTATG GCGGAGCCGT 
    ACACATGTGC CTGCACCGCC GCCTCGGTCT TCGCCACCGC TTAAAGCTCT 
    CTCCTTTCCC TTCTCTTCCA GTTTATGGTT TATTCACAGA ACCACAATTT 
    CTCCTCTTTT GTGTTCAGCT GAAAGTTCCT CGGAGATTGC CCTGGCGCAG 
    AGCCAGCCTG CCCCTGATTT CAATCGTAAG TCCTCCATTG CTGCCTTTAA 
    GATTATATAA ATGATGCTTT CCGGTGAATT AAGGCATCTA TTTTTTTTTN 
    NAAACCGCGT CTNTGTTNGG GTGGGGNAAG GGGTNCNACT ACCCNGGNNG 
    GAGTTCNCTN AAAANGNGTN NGGCAAANGG NACGGTTTCG NANCAAATTT 
    TACATGCAAA GGGCANCCGN TAAANCTNCC TGAATCAGGG GTTCCANAAC 
    CCTTTAAAAA NNGGNAAGTG AAGGNGTTCA ATGGGCAAAC CCANNGTCCC 
    ANTTTTGCCC AGCCAAACTN ANTATCCTTT NTTTANAAGT CCATNAAACT 
    CCTCCCCACC GTNGGATGTN AANCTGATGC ACCCNCCCGT TACAGNATNN 
    ACCAAAGGAT CATNGGGGGA GGCAAATCCT TNGNATTANC CTTTTNGNAT 
    TNNGGCACTG GCTCCTATGN CNCTTGGGNG GCCTTTTGGG NAAAACCAGN 
    TTGNGGGGGA ACNTTGNNTG NTNAATCCAA GGAAAGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17927251 [Map]; Strand: w
      • AT4G38225.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT4G38225.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT4G38225.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-4249-1 - 3-prime edge 
    AANGAGAACA CGNGGAGGTG TTTTTNACCN CGCGNNCCCN NNCGNTTTTN 
    TCCCTNCCGG GGGGNCNATC ACNTTTGGGN NCNGANCAGA GAGAGTCACG 
    AACGAAGANA TNGGNNGACT GGNTGGGTTT ACNTTAAATG GATTTCGNNC 
    TGGATNATGC TNATGGGCCT NATTTGNACG GCCCNTCCAC NACGNNGAAA 
    CCCCGGGNNA AAAAANAANA AGCCTTGAAA AAGCNNGAAT GAATTATACN 
    ATTTGCCNAT GCCCACTGNC TCACNACAAG AACAAGATGN CTNTNNTTTN 
    CCNCCACNAA CCCNGGNNGG GTNNNNCTCT TTTTGNTTGN ACNAATTTGC 
    NAANGGAAAA ANNNAATGGG CTGNGNTGAN ACCCTTATNA CTTATNTTGN 
    GAACCNCTTT TNCTTTNATN NNANGCATAA GCTTTNATTT TGGNGCCTAN 
    NCCNATTTNN GGTTTNGGTT TNGCGNGGNC AAAANGNGNA ACNGTATNGT 
    CTTNTATTNA GATNCCCGGA TNCTTTNTAC NTTTTTTNCT NAANNATACC 
    CATGANAACC CCTNNTTTTC NTTTTNAAAA CNCTCCCCGG NCNTTTTNCN 
    NTTNTNNNAA NNTTTTNNNG GGGGNNCCNA AGNCCNTNTG ANTTTTTGGC 
    TTTGNGTCTT TTNACNANAN ANAATTCCNN CCCGGGNCNN NNNNCCGCNN 
    TNNCCNTTT

AT4G38225.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38225.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38225.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR