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53-4281-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17699225 [Map]; Strand: c
      • AT3G47960.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-4281-1 - 5-prime edge
    ANAGCCTNNG NTAGANCATT GGCCTGGTNT TGCATCGNGT TATAGCACGC 
    CGNGATCAAN AAACGAGGNT TGAAGCCGGT TAAGCAGCCT TGGGTCAATC
    TTGTACAACC ATATCCCGTC TAACTATGCA AATACTACTC TAAAATACAC
    CGACCAGTTC AGGTAAATTG ATATCTACTT ATTCTTGGTT CTCTTGCTTT
    ATGTTTCTGG CTTTTGTTTT GCTGAAAAAT GTTTGTTTAT TATGTTGCCA
    GATTTCTAGA CAAAGCAGCA ATTATGACCC CCGAGGAGAA GTTGAACTCC
    GATGGAACGG CTTCCGATCC ATGGAAACTA TGCACGTTGC AGCAAGTGGA
    AGAAGTGAAA TGCATTGTAA GAGTGATTCC AATCTGGTTT GCATCCACGA
    TATACTACCT TGCAATAACT ATACAAATGA CTTATCCGGT CTTCCAAGCG
    CTCCAGAGCG ACCGACGATT AGGTTCTGGT GGCTTCAGGA TTCCTGCGGC
    CACCTATGTA GTGTTCTTGA TGACTGGCAT GACAGTTTTC ATCATATTCT
    ACGACCGTGT ACTTGTCCCG TCGCTCANAA GAGTGACCGG GTTAGAAACC
    GGTATATCAC TCTTACAAAG AATCGGAGCT GGGTTTACAT TTGCGATAAT
    GAGTTTATTA GTTTCCNGGT TTATAGAGGA AANGAGAAAA ACTTTGCATT
    GACCAAACCG ACACTCGGGA TGGN
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17699292 [Map]; Strand: c
      • AT3G47960.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-4281-1 - 3-prime edge
    AANGGAACAC GGGGNGGTGT TTTTNACCNN GCGGTCCCNN NCGNTTTNAT 
    CCCTNCNCTT TTACATACNA TCTNTCNNCC GCAAAGAAAA NCACNCNCNC
    CNAGAACNTN AGANCCCCCG GAATGNTCAA ACCGNTTGGC CNACTCACAT
    TTGNCTGGNT NTACNCNACT GGTGGGANCG ANANNATNTG CNCCAACGNG
    AAAGNGAAAA AATNCCNGNT GNANAAACTG GTGANCCCTT TTTTTNCTNN
    TTCGGATTTG GGGNTGAACT GNTCNNCCCC NAACNCTNAA TTACCCGGNC
    TNATNCCNNC AGCGCCTNCC NCNNGAAAGC CTNAACCCAT GNNCNNAAAC
    CGTNTTTNNN CCACNCTTGG CCCTTNNCAN GAAATTTTNT TTCCNNAAGC
    CACGGGGNGC NACNACGGNA TTGNNNCNNT NAGTTNTNTC ACAAACNANC
    CCTNCAGANA NGAAAAANGG NTTAAAAAAC NTTGGCGAAA ACCAAACCGG
    NGTNNTGAAA GANTATTTTT NAAAGNTGTN CCNNAAAACN AGCGANGACC
    GCNACCCTNN NAGTNTTGNN GCNACCAAAG TTAGTGNCGC AAAAAAAGGN
    CNCAATAAAA GNCCCGAAAT TGGTTGNNCC CNTNAAGGCN TTGNNNATTG
    GTGCNNCTGN GTANCTNTTA AGGGTGAATA CAANAGTTAG GNNCCAANAA
    NGGTTGANTA TGGCCCTNNN ATCCCAAGNT TTNAANCNGG GGCNGAANCN
    GNNGNNNNTT T

AT3G47960.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G62680.1); Has 3941 Blast hits to 3750 proteins in 534 species: Archae - 0; Bacteria - 697; Metazoa - 584; Fungi - 378; Plants - 2186; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).
Link
InterPro Scan - TAIR