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53-4348-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23919546 [Map]; Strand: c
      • AT5G59290.2 - [+] show detail - UDP-glucuronic acid decarboxylase 3
        Distance: -1548; Region: intergenic
      • AT5G59300.1 - [+] show detail - ubiquitin carrier protein 7
        Distance: 51; Region: intergenic
    Flanking Genome Sequence: 53-4348-1 - 5-prime edge 
    TCAGCAATAG TTTGCTCTCT GATTTTGCGC TGCTTACACT TCACAGTTTG 
    TTTGTTTTGA ACTGGAACTT GTGCCATTGC GCTTGGAATG ACATTGTTTC 
    CCTCTCTATA GCTTCATAAG TACTTGCACA GTCATTGTCA TCACAACCCA 
    TGCCGGTTTA TCCAATAAAA ACCGGCATGC AGTTTATATT GAAAGTATGG 
    AAACTGCGTG ATGTCTACTT CAATGTGAGT GGGTTTAAGC CAAATTCATT 
    GGAAAGGAAA ATGGGAGATT CTTATTTAGC GAAAGGGTGA TGTCCACTTC 
    AATGTCATTT GAATGTGTTT GAGCCAAATT TCCTTTCCAA TGTTTGATTC 
    GCAAACTTGA GAGAACCTTT GGGTTATATT AGCTTGATGA CTTATCCGGA 
    GGTCTTCATT TTCTTGGTNG AAGAAGNAAC TANNAACTTA NACAATNTTA 
    CTATCTAAAG ATGNGAATNC AATTATTCAT TTTACAAANN AANTGTNNCT 
    TNTGCNNNNN ANNNNGGGGN NNNAGNCNNN NTNNNNNNNC NNNGANNCNA 
    NNANNNNNGA NGGNNANNNN ANNNNNNNNN CNNNNNGNNN NNAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23919608 [Map]; Strand: c
      • AT5G59300.1 - [+] show detail - ubiquitin carrier protein 7
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 53-4348-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATNCC 
    TNATATGNTG ATCTNATNNG TCATATAACT TTATACAGCN NNGATGATTC 
    TTANNANATG AAANTTATAA TTCTANNNCC AGTTTNTCAT GAACAGCTCT 
    TTTCTCAACC NAACNCGTNT TCAAAACGCC TCTGGTTCTN NAACGCNGAC 
    ATANAGAGAT GTCAACCTGA GNTATAACAA GTTGCGTNNC AAAGGGTTTC 
    AGATAGGATT ATGAANAACT GTTGATTGAA ACTCCAGAGA TCTCAANGGT 
    GTGAAGTTTG ACGTGCGATC AAAACATTTC TTGAGACTTT NTGACNCAAC 
    GGCTCACTTT CTTCTTGAAC TCATCTCTCT TATCTCGCCA TTCTTTCTGC 
    GCAAGAGAAA ACACACAAAA TCCATAAGCA TGTTCTGCTC TTAATTGCAA 
    GCTATGTGCG ATAAATCGAT TGAAATACTC ACGGCAGCTT CAACATTTGC 
    TGGAGACTCA TCGTTAGGAC CAGAAAGCAT TGATATGATA CTCAACATAA 
    TACTCTCAAC CTGAAAGCAC CATAATTNGG TTTCACTACG GCATGAACAT 
    CTGAGACATG ANATAAATGA CCTAGAGATC CCTTTATAGT GTCTGAACTA 
    TAGTAACTCT AATCATAGAA TCTACTACTA TGAAGCGAAC AAAAATGAAC 
    AAACTCAAAT CAATTTGAAC ATACTGTATG AACAGGAGTC CAACGCTCGC 
    TTGCAAGCTC ATANCCGCTA GG

AT5G59290.2

Model type
Protein coding
Short Description
UDP-glucuronic acid decarboxylase 3
Curator Summary
Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes.
Computational Description
UDP-glucuronic acid decarboxylase 3 (UXS3); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: UDP-XYL synthase 5 (TAIR:AT3G46440.2); Has 42743 Blast hits to 42677 proteins in 3006 species: Archae - 845; Bacteria - 24952; Metazoa - 655; Fungi - 341; Plants - 1394; Viruses - 85; Other Eukaryotes - 14471 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59300.1

Model type
Protein coding
Short Description
ubiquitin carrier protein 7
Curator Summary
ubiquitin conjugating enzyme E2
Computational Description
ubiquitin carrier protein 7 (UBC7); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 13 (TAIR:AT3G46460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR