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53-4361-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4067 [Map]; Strand: c
      • AT3G01015.1 - [+] show detail - TPX2 (targeting protein for Xklp2) protein family
        Distance: 0; Region: exon1 (5UTR)
      • AT3G01010.1 - [+] show detail - UDP-glucose/GDP-mannose dehydrogenase family protein
        Distance: -275; Region: promoter
    Flanking Genome Sequence: 53-4361-1 - 5-prime edge 
    TTCCTCACAA GTCGCAACGG TCAGACAATT CCCTCCTCTC CCTCTCTCTT 
    CTTCTTCTTC CCTTCACTCA CTCGAAAAGA CAAAACCCTA ATTTCTCACA 
    TTTTTCTGCT CTCATCTTTC GATGGAGTCG ACGAATTTGA AGAATGCTAA 
    ACACGAGACT CTGGTGATGG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4183 [Map]; Strand: c
      • AT3G01015.1 - [+] show detail - TPX2 (targeting protein for Xklp2) protein family
        Distance: -24; Region: promoter
      • AT3G01010.1 - [+] show detail - UDP-glucose/GDP-mannose dehydrogenase family protein
        Distance: -159; Region: promoter
      • AT3G01020.1 - [+] show detail - ISCU-like 2
        Distance: -921; Region: promoter
    Flanking Genome Sequence: 53-4361-1 - 3-prime edge 
    GTGAGGAAGC TCTCGACTTT GTATGTAACG GCTCGCTCAG TCATTTACTG 
    GATTTTCGTA ATTACTACGA TTAATTGCTT AATTTCAAAA AAAATTAGTT 
    TAATGCTGGA ATCTAATATG TTTGTTTGGG CTGGCCCAAA CCCAATTGTT 
    AAACTGATCT GAAATGATTG TTATACAAAA AAACCGGTTC GTGAACCGCA 
    TTGTCTCATC GATGTTCAAT ACTGTTTCCA ACAAAAAGAT TGTTGTCCTC 
    GAGTTCGCCT TCAAGAAAGA CACGAGAGAG ACTCCAGCCA TTGACGTCTG 
    CAAAGGTTTG TTAGGAGACA AGGCCCGAAT CAGCATCTAT GATCCACAAG 
    TCACGGAAGA ACAAATCCAA AGAGACTTAA CCATGAACAC ATTCGACTGG 
    GACCATCCAC TTCACCTCCA ACCCATGAGT CCAACCACTG TGAAACAAGT 
    CTCAGTTGCT TGGGACGCTT ACGCTGCCAC CAAAGACGCC CACNGAAATC 
    TGCTTGTTAA CCGAGTGGGA CGAGTATAAG ACGCTTGACT ATGAGCGGAT 
    TTTTGAAACA TGCAGAANCC AGCGTTTGTC TTCNATGGCA NAAATGTTTT 
    TGATGCAAAA AACTGANGAA ANAAGGGTTT ATTGNTACTT TNTTGGNAAG 
    CCGTGGACCA GNGGCCATGC CTGCTTTGCT TAACTNAAAC TNTTTGNCCT 
    TTN

AT3G01010.1

Model type
Protein coding
Short Description
UDP-glucose/GDP-mannose dehydrogenase family protein
Computational Description
UDP-glucose/GDP-mannose dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT5G15490.1); Has 4547 Blast hits to 4540 proteins in 1270 species: Archae - 101; Bacteria - 2703; Metazoa - 193; Fungi - 72; Plants - 179; Viruses - 0; Other Eukaryotes - 1299 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01015.1

Model type
Protein coding
Short Description
TPX2 (targeting protein for Xklp2) protein family
Computational Description
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G15510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01020.1

Model type
Protein coding
Short Description
ISCU-like 2
Curator Summary
Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.
Computational Description
ISCU-like 2 (ISU2); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: SufE/NifU family protein (TAIR:AT4G22220.1); Has 5480 Blast hits to 5480 proteins in 1991 species: Archae - 108; Bacteria - 3649; Metazoa - 148; Fungi - 153; Plants - 89; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR