1. Home
  2. Mutant Lines
  3. 53-4367-1

53-4367-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4867017 [Map]; Strand: c
      • AT3G14500.1 - [+] show detail - transposable element gene
        Distance: 195; Region: intergenic
      • AT3G14510.1 - [+] show detail - Polyprenyl synthetase family protein
        Distance: 361; Region: intergenic
    Flanking Genome Sequence: 53-4367-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCATA TGTAGACGGA CCAAAATCAC AGTCGACCGG 
    AAATGGTTTT TTGTTGCAGA ACATGATACT GTACTTACAA ACACNTGCGT 
    ATGTCGTAAC TTGGAAGGAA TTTAATGCCA TTGAGAAAGA GAGAGAGAGA 
    GAGAGATTTT TTTTTTGGNG NGAGCCNGGG AAAAANNCCG GGGNTTATGG 
    AAATANACAC AANCNANATT ACAANGGGAC NGTTCGTGAN CGTAAAACTC 
    NNTCGGATNT TTNCCCCNAA AATGGGAAAC TCNTTNTACN GGGCCCTGAA 
    NNAAACGCGN GAAANCCCAA AANCAAANAN AATGCGNGGN TANTCANCCC 
    NTNTGTAANC NGGNNANCCT NCCNATACAC ATNANACACT CGGACTNTNG 
    AGTCNTTTTT AAAAAANCCN TGACACANNC GNNCANGGNN GGACAGNGGN 
    TNANTTNCCN CAATTTCCTC AANCCCNGTG GTNAAAAACC CANCTNNTNC 
    CTCCNAATCC NCCNCCANTT TTAAACNCAT ANTNTTTTTT TCCCANGTAA 
    NATACACCCC ATANNAAACN CCTCAAAGTT NTGNTAAANA GATANANATT 
    GAACATTGTT TGTGGGGATT CTCAATNAAT NCANTCNTAT TAAANGANNG 
    TCTAAAATTT TCCAGNGANG GCTTTTAAAT TTTTAATGNG CACATATGNG 
    CCCNNCCCAA AAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4872306 [Map]; Strand: c
      • AT3G14517.1 - [+] show detail - transposable element gene
        Distance: -167; Region: promoter
    Flanking Genome Sequence: 53-4367-1 - 3-prime edge 
    GATACATGAC CCGTCCGTGC CCACTTTGCT ATCTCTAGGT ATGCCTTCAC 
    AAGGATCTTG AGCTGTGTGT ATGGACTCAA AGAACTAATA TTAAGAGTCT 
    ATTAACCTTT TTTTTTCTTT GTCAATCAAG AATACACTAA GTCACCTAAC 
    NTGTATATAT ATAATCTCTA TATACAAATA CAAATATTGA TTACCTTCTC 
    TGTTGATTGT TTCACGCCGT AAGATCTTCC TTTTGGTCTC ATTTCTCGTT 
    CAATCTCTCC TATGACCTCA AACAAACTTC CGAGGACGAT TCGTAAATAG 
    TCTGGTAGTT CATCACTGAC ACCAATATTC CACCTGGTCA TACCAATATT 
    TTTTTCCACG CTTGCATTAA TTTAAAAGAG AAAGAAAGAG CATATNCATT 
    GAGAGAGAGA GAGAGAGAGA GTACNTCTGC AAACATTCCG TAAGAGCTGT 
    AACTTCGGNA AGAGTNGCAG ATGATGCATN ATATGTATCA TCAACAACAN 
    CCACCATCAT NATGATTTTA GTCACGANGA TTCTCGNGAG NGAATACTGN 
    GGCTNGAAAT ACGCTGCCAC AGACGCCAAG NGACACTCCA CAAGTCTATC 
    CCTAGTGTAG GGTAACTTAG ATGCAAGATC TAAGTTCTTC CNCCATCTGA 
    NACCNTGCAT AAAAGTAAAT GAATTGGAAA AATTGAAACC GAGACCGATG 
    TTNTTAAN

AT3G14500.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to hypothetical protein MtrDRAFT_AC139526g2v1 [Medicago truncatula] (GB:ABE80133.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABE81233.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337)
Link
InterPro Scan - TAIR

AT3G14510.1

Model type
Protein coding
Short Description
Polyprenyl synthetase family protein
Computational Description
Polyprenyl synthetase family protein; INVOLVED IN: isoprenoid biosynthetic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 3 (TAIR:AT3G14550.1); Has 16768 Blast hits to 16761 proteins in 2954 species: Archae - 342; Bacteria - 9432; Metazoa - 303; Fungi - 466; Plants - 462; Viruses - 13; Other Eukaryotes - 5750 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14517.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-38 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR