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53-4403-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1881234 [Map]; Strand: w
      • AT2G05190.1 - [+] show detail - pseudogene, cytochrome P450 -related, blastp match of 34% identity and 2.0e-0...
        Distance: 2216; Region: intergenic
      • AT2G05200.1 - [+] show detail - transposable element gene
        Distance: -1818; Region: intergenic
    Flanking Genome Sequence: 53-4403-1 - 5-prime edge 
    AAANNAAANT TTAAAAACGG GNTAAAACTA ACAAANCGGT TATACGATAA 
    CGGTCGGTAC GGGATTTTCC CATCCTACTT TCATTGCCAA TATTGCGGAC 
    TACTTTTTGA AGCCGCAATG GTTTGATTCT CTTGGTAAAG ACAATTCTAG 
    TCTATATCAA CATATTTTTG GTACCGATAA ATGTCACCTT AAAAGCTACN 
    GAAGATGCAT ATATTTGCAA CGGTCTCTCT GATAGTATAT TTGCATTGTT 
    TAATGTTTCA CACACATTGT AACACTTATA TTATAGATTT TGTTTTAATA 
    TGGAAAAGGA CTAGGAATAT TGGAAAATTG TTGCCTATCC TATGACCATG 
    TACATGAGTG ATATTCTAGA GTATCACAAG TCCAAAAATT ATTTTTATAT 
    TGATAAAACA ATTAGAATGA GCTTGATCAG TATCAACCTA GTGATACTTT 
    TGATACTAAT TTCATCTGAC GTGACATCTC TTGATTGGTC GCATTTGCGA 
    AAAGCAAGAA GAAAAAATAT ATCTATTAAA TAAACATTAC AAATAATACT 
    AAAAAAATTT TAATGATACT TTATGAATAT CATCTATGAC CATGCTCTAA 
    ACAATGTCCA TAATCGTCCA TAATCGTATC AAAACATCAC AAGGGCTATC 
    AACGTTCGTG TTGACTAACA ACTAAATGAA ACACAAAGGA GGTGGTGGTC 
    TAGTGGTGTA TAAGAAGGTT GGGTACCTTG TGTTCTGGGT TCAATCATCT 
    TTTGGACGGN GATGCATTTT TTAAAATAGG AGTGGACTAA GG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12530659 [Map]; Strand: c
      • AT1G34340.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -168; Region: promoter
    Flanking Genome Sequence: 53-4403-1 - 3-prime edge 
    AATATTGCAT AATGCTTGGT CCGCAATGAT GAATGGTGAA TTAAGTGCGG 
    ACTTTAATCC GGTCTTGAGC ATACTACATA ACCATTCATA GCCAAAGAAG 
    TTTACACACG TAAACGAACA AAACGGAACG AGAATTATGC CCACTCCTAG 
    TGAACACGAA AGCGTCGCCG TGTAATTAAA GAATTTCAAA ATCTGAATTA 
    AATAATAATA AACATTTAAG TCCGTCAAAT CAATCTTCAC CCGCCACTGA 
    ACCATGAGTC CATGAAGAAG ATCCGTCTCT AGTTCTTATC GCCGGATCTG 
    TAACAAATCA CACACATCAA TCAATCAATG GAAGAAGAAG ATCTGATTCT 
    ATCTCCATCT CCATACGATC TTCTCTTTCA AGCTCTAACT CTCATCCCGA 
    TTCGTCACTA CCTCATCGCT CTCTTCGTTC TCTGTACCAT CTTCTTCTAC 
    AATTTCGTCG AATTTCACTT CCTTGGAGAT GCGATTCTTC GTTATTTCAG 
    ATGTCGCGTC AATCTCATTT GCAATCCAGA TTCTCCTCTT TATCACGGTG 
    TTGTTTCTCG GTGTCGGATT CTTCACGGCC GGTGAGTGTG TGTAACTTAG 
    ATTTTGGGCG AGATTGTGAA TT

AT1G34340.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G49950.1); Has 2391 Blast hits to 2388 proteins in 904 species: Archae - 0; Bacteria - 1410; Metazoa - 329; Fungi - 194; Plants - 136; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G05190.1

Model type
Pseudogene
Computational Description
pseudogene, cytochrome P450 -related, blastp match of 34% identity and 2.0e-07 P-value to SP|Q42798|C931_SOYBN Cytochrome P450 93A1 (EC 1.14.-.-). (Soybean) {Glycine max}
Link
InterPro Scan - TAIR

AT2G05200.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 8.3e-42 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR