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53-4409-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19886080 [Map]; Strand: w
      • AT5G49060.1 - [+] show detail - Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)
        Distance: -418; Region: promoter
    Flanking Genome Sequence: 53-4409-1 - 5-prime edge 
    TAAGCACCCC TCCGTTATGT GCAATGGAGG TCACTAGCCT AGGCCACTCG 
    TCTTATTGAT CACAAGTTGA CCCCGTCCAG GTAAGTAATT TTCTCAGACT 
    GTCCACATCT TCACTTATAC TCTGCTTCCT CAATCATTCT TTCAGGTCTT 
    AGCGATGTGG GACTCTGCAA ATTAACACAT CTCACACACC TATTGGTCTC 
    TTTTTAACGA GATGAGTTTT ATGTTATACA CATGAGCCAT AGCCCATATG 
    NCCTCTAGGC CCATTGAAGT GCATACTATA AATAGAATTT TTTTTTNTGG 
    NATNNTNAAA CNGTTTNAAA NNCNTNCGNT NGNTNNANNC NCAATTTTTN 
    AAANNTNGTT NCGGAANCNG TAAANATTTT TTNCNTTTTN NANAACCNGT 
    TAGGGTNNCN GGAAATTNNC CCAGGGTTNA CCTTACCTNT AAAAGGGTCN 
    AGCTTCCCCT NNTTTNGTNN TNCAACTNCA AAANGGATAA GTTTNTCNTT 
    TTTTTTTCCN GGGGNATTTT GGNGNNGNAA ATAAGGGNCT TTTTTAAAAT 
    TTTACNCCNT TTTTTTAANN CNCNAAATGN NCCNTTTTTN GGGNGNTTGN 
    CCNAAAAANN CAAAANTTTA AAAATCAANC TGNATNCCAT TNGNTTGGGG 
    GGNNATTACA ATTTNATCCN TTTNGGGGNN AAANANCCNC CCNNGCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19885964 [Map]; Strand: w
      • AT5G49060.1 - [+] show detail - Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)
        Distance: -534; Region: promoter
    Flanking Genome Sequence: 53-4409-1 - 3-prime edge 
    GGTGCTTAGC TTAAGGTCTC CCCAAGTGGG AGAGCCTGCG TCATTATTTG 
    TGGCAGAGGG GGCCTGCGTT CGCGCGGTCC CTACCATTCT TTTTACATGA 
    AACCTTTGTT AAATAAAGCT GTAAAGGGTA ATTTCTTATT AGGAATTGTA 
    AGTTTCGAAT T

AT5G49060.1

Model type
Protein coding
Short Description
Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977)
Computational Description
FUNCTIONS IN: protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (TAIR:AT3G57340.2); Has 23804 Blast hits to 23788 proteins in 3287 species: Archae - 182; Bacteria - 9342; Metazoa - 4208; Fungi - 2292; Plants - 2452; Viruses - 18; Other Eukaryotes - 5310 (source: NCBI BLink).
Link
InterPro Scan - TAIR