Home
Mutant Lines
53-4420-1

53-4420-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 30116986 [Map]; Strand: w
- AT1G80060.1 - [+] show detail - Ubiquitin-like superfamily protein
  Distance: 0; Region: exon2 (CDS)

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCA TGAAATCATG CCGTGACCTT CCAGAGGAGA 
AATGGTGAAT ACTTGTTCCA CAGCTCTTTT GAGCTCTGCC ACTGAGCAAT 
CCTTTGCAAC TTCCACATCT ATTGATTCGT TGGAAACCAT TTAACTTCTT 
GAGAGGCCAA ATCAGAAACA GTAACCAAAA AACTAGTTGA TACTTCATCC 
AAAATTATGT CTATTAAGGC TCTTAAACAA TGATTTCTAA CAGCAACAAA 
AAATTCCGGA TTAGAGATCG ATTAGGGTAT CACCAACTGA GGGAACCGTT 
GAGCTTGATT GTAAACTAAA CTCTTAAAAT TGCTATTTCG GAAACTGGAT 
AAGCAAAATC GTACCGAAAA GGGAGCCGTT GAGCTTAACG ACGGAAAGCT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 30116934 [Map]; Strand: w
  - AT1G80060.1 - [+] show detail - Ubiquitin-like superfamily protein
    Distance: 0; Region: intron2 (CDS)
Flanking Genome Sequence: 53-4420-1 - 3-prime edge
```
CATGGTATAT CATCATTTCA TATGAAAATT CTCACAGCTT AAGCT
```

AT1G80060.1

Model type: Protein coding
Short Description: Ubiquitin-like superfamily protein
Computational Description: Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G32270.1); Has 129 Blast hits to 129 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR