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53-4446-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17507389 [Map]; Strand: c
      • AT3G47500.1 - [+] show detail - cycling DOF factor 3
        Distance: -1331; Region: intergenic
      • AT3G47510.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -3690; Region: intergenic
    Flanking Genome Sequence: 53-4446-1 - 5-prime edge 
    GTTTTAGTCA CTATTGGGCC AAACCAAAAA AATGTTTGAA CACTAAAATA 
    AGAGACAACA AACTAAGAAA ATAGTCAAAG AGATTATTCT CTTCTTACTA 
    AAGAGGGATG AAAACATCAT CTAGTTCACA TCAATATCTG GAATGGAGGG 
    TTGCCTAAAC CTCCACTCCA TTGAATGTGC ATAAACTACT TTCAGATATG 
    CAGTTTTGTA GTCATTCAAG AGATCAAGTT TCTTGATGAC ATAGTATTGG 
    CCAAGTTTTA TAATCTACAC AACAACTATT ACGAACTCAC CCTTATCACC 
    ATACTCAACA ACTTTTTCGG ATCGACTAGT ATCATTACTA AATTTGATTT 
    GTGGTTGCTT CATCCAGTTA GAAGAAACTG ATATCCAATT CCAACGAGGT 
    CTAATATCTA TTCTATAGAA AATTCACTAC AACAAATATT CGCATTGATA 
    GCACAAAAGG ATAATTCATT TTCCGTTACT GCTATGAAAG ATTAATTTTT 
    ATTTTGATTA TTTTGTAAAT AGCGTTTGAT AAACACTATG ATAGAAAATC 
    ACTAATCGGG AAGCTAAAAT CATCTATTCC ACCAATATTT ATGCGAAAAA 
    ATCACTTAAG CGCCTTATGT CTCAGATCTA AAAATATTAA GCGACAAAAC 
    GCTNAACACA TCTTAAGAAA AAAAAAAATC CCCCAATTGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17507505 [Map]; Strand: c
      • AT3G47500.1 - [+] show detail - cycling DOF factor 3
        Distance: -1447; Region: intergenic
      • AT3G47510.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -3574; Region: intergenic
    Flanking Genome Sequence: 53-4446-1 - 3-prime edge 
    ACTAAAACTC TTTCATATTG TTATAGTAAT AATGCCATGG TCTCTCTTTC 
    TTAATAGTCT GATATCTATT TGGTTTGATT TTCTTTATTT GCTTTCATTT 
    GGTGATTTTG TTCCTTTATT CTTACCATTA AACTTGTGTT TTATGGTTTT 
    GTTCTAAAGA ATTTATGGAC GTAAAGAAAA AAAAAGATAA AGAGATTTAA 
    GATCAGAATA AGAGCAAAAA AAAAAAAACC NNNGGGGGGN GGATTTTNAN 
    NGCCNCGNNC TAAAAANNGN GNNGGAAANA AAANGGGTTT TAGGGNNTTN 
    CCCNATTNNC CAAAANCCCN CNNNNGGNTT TNGGNNGNAN NTNATCAAAN 
    TCNNNNTTTT GCCCCCNCNG NNTTTTTGCC CNCCCNCNCC NNGGNTTTAA 
    AAAAAAAAAN NGNGGGNTTT TTTCNTCCNA AAANANANNC CCNCCNTTCN 
    TTNNNGTCCC GGNNNTTTGG CCCCNCNAAA NATTNTTTTT TTTNTCCTNC 
    CNCCNNNCNA NATGTTTTTA ATGNNNGNCC CCAATNGGGG GNANNNNNNG 
    ATTTTNGCGT TTTNNNCNNT AACGCNCNTT NNNTNNGNNN NTCNAANATN 
    TTNCGTCNAT TTTTNTNANC CNNNAAAAAA ANANACNNTC TCNNTAAAAN 
    CNCCNTNNNC NANTTNNNNN CNCGACCCNN ANANNTTTTT TTTANGGGNA 
    NANNNNNGNN CGNCCCNTNA NGGNNCTNAN

AT3G47500.1

Model type
Protein coding
Short Description
cycling DOF factor 3
Curator Summary
Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions.
Computational Description
cycling DOF factor 3 (CDF3); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: cycling DOF factor 1 (TAIR:AT5G62430.1); Has 1160 Blast hits to 1145 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 10; Plants - 1084; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G47510.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR