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53-4459-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22697984 [Map]; Strand: c
      • AT5G56040.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (3UTR)
      • AT5G56040.2 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4459-1 - 5-prime edge 
    CCTCCGGGTA GATCCGGGTC CAATGGATGC TTCCCGGTTA AAACTTCTAG 
    TAGCACCACT CCATAGCTAT ACACATCACT CTTTTCTGTT ATATGTTGCA 
    TCGAAGCATG TTCTGTAACA AAACAAATAA AATCCGTTAT AAAGTTAATA 
    TTTCGAAATT GATAAGTTTA TAACGTTAAA ATCGAAATTT TGAATTTTAC 
    CTGGAGCCAT GTAACCATAA GAACCGGCTA ACGGAGGCCG GTTACTCAAT 
    TTAGACGAAT CTCCATCGGT AACTCCCTCA CCGGAGACGA TTTTTGCTAA 
    ACCAAAATCG GCTAAGTAAG ATTCGAAGCG GGAACCCAAT AAGACATTCA 
    TAGCTTTAAC GTCACCGTGT AGAATCGGAG GAAGACAATC ATGATGAAGA 
    TAAGCTAGTG CATGTGCAAC GCCTAAAACG ACGTCGTAAC GTGCTTCCCA 
    ATCAGCTCCT CCACTTCCTT TACCGGCACC ATGAAGCAGA GAGCTTAAAC 
    TTCCGTTAGG AAGATAATCA TAGAACAAGA GCTTCAGATT CCGGTTCGAA 
    CACCAACCCA AAAGACGGAT TATGTTCCTA TGTCGAATCG ATCCAAGAGT 
    GTTGATCTCT GAGTTAAACG CTCTGTTTTC TTCCTTTGAC CACATTTTCT 
    TCACAGCTAA AGTTTCACCG GACGGGGATT GTGACTCTGT AAACTACACC 
    G

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22698100 [Map]; Strand: c
      • AT5G56040.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (3UTR)
      • AT5G56040.2 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-4459-1 - 3-prime edge 
    CCCGGAGGTG CTCATTTGGT TCAATGGGTG AGAGATCATT TAGCCGGAAA 
    GAAAGATCCT AGAGAAATTC TTGACCCGAG ACTCCGCGGG CGGGCAGATC 
    CTATAATGCA TGAGATGCTA CAAACTCTAG CGGTCTCGTT CCTTTGTGTG 
    AGCAACAAGG CATCCGATCG GCCTATGATG AAAGACATTG TGGCAATGCT 
    TAAAGAGATT AGGCAGTTTG ATATGGATAG ATCGGAATCC GATATGATAA 
    AAGGCGGAAA ATGCGAAAAA TGGCAGCCGC AACCGTTACC ACCGGAGAAA 
    ATTGTCAGTA CTCCTCGAGG TTCATCTAAT TGTTCGTTTG CTTACTCGGA 
    TGAATCCGTA TAAAAATTTT TACAGGAGTT CGATTAGGGT GATGACATTT 
    ATAAAATGTG TGTGTGAATA TTTATTTGTT GTCGATGATT TGTTAGAATC 
    AGGGAAAGAA AGATCTAAGC TTNCAGANCC AGNAATAAGN CNCGCTGCCN 
    NCNNNTGGAG TCCAAGNTNA CNTCAATGTC ATGTGTATGA NCGAGTATNC 
    GAACTTAGAC CGNANCCACT CTGNNNNNCC TANNNNNNGN TNNCTTGNTN 
    NAANACNCAN NGCCNAANAC TCATNTGGAC TTTGGCTCNC CATAAAAGCT

AT5G56040.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G26540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56040.2

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Computational Description
Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G26540.1); Has 231331 Blast hits to 125911 proteins in 4380 species: Archae - 141; Bacteria - 23597; Metazoa - 71861; Fungi - 8804; Plants - 101197; Viruses - 340; Other Eukaryotes - 25391 (source: NCBI BLink).
Link
InterPro Scan - TAIR