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Mutant Lines
53-4486-1

53-4486-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 29601966 [Map]; Strand: w
  - AT1G78710.2 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
    Distance: 0; Region: intron1 (CDS)
  - AT1G78710.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
    Distance: -742; Region: promoter
Flanking Genome Sequence: 53-4486-1 - 5-prime edge
```
GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTGTTTATA ACGGCTAGAG ATTCCATATT CTGACATGGG 
CTCGATTTTG TTCGTCTTTG GTCCTTACGA CTTTTTTTTT GTAATTCACA 
AAGGAAGGTG GATGACGAAA GTGTATCCAT ATTCGCTATA ATCATCACAT 
GGAAGACAAC ACAAAGCT
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 29601956 [Map]; Strand: w
- AT1G78710.2 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
  Distance: 0; Region: intron1 (CDS)
- AT1G78710.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 42
  Distance: -752; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATAAA 
CAGAGACTCC TCTGTCACTG CAAAAACCTT CCTTATTTCG TCGTGTTGAA 
GCGTTTTTTG TTGACTAATA ACCATGATAA TGCTATAAAA CAATAACATA 
ATTTCCTTCG TTGACTATAA GTGTTAACAT AAACCGTCTA ATTATAACCA 
CTCAAACCGG GGTTTTACGT TAGCTGTTAA ACCGGGAAGG TTAGGAAACG 
AGACAGTGAA ACATAGGCAG TGATAGAATT

AT1G78710.1

Model type: Protein coding
Short Description: TRICHOME BIREFRINGENCE-LIKE 42
Curator Summary: Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description: TRICHOME BIREFRINGENCE-LIKE 42 (TBL42); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT2G31110.2); Has 1333 Blast hits to 1315 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1331; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78710.2

Model type: Protein coding
Short Description: TRICHOME BIREFRINGENCE-LIKE 42
Curator Summary: Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description: TRICHOME BIREFRINGENCE-LIKE 42; INVOLVED IN: biological_process unknown; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 43 (TAIR:AT2G30900.1); Has 1785 Blast hits to 1336 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1785; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR