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53-4489-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21915248 [Map]; Strand: c
      • AT5G53980.1 - [+] show detail - homeobox protein 52
        Distance: 499; Region: intergenic
      • AT5G53990.1 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: 302; Region: intergenic
    Flanking Genome Sequence: 53-4489-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT GACTATAATA CACTAGATGA TCAATGTTAT 
    CCCTGGATGA GCCAATTTGA ACCGGGCTCA GTGATATATA TAGTTCACTA 
    GGGAACCAAG TCACTCTCGA NCCANNGGGG NCAGCCCACC NGACNTGCNA 
    CANNTAAACT TTACTAAAAT AGTTTCATTA GCTCCTGAGG TATTATAAGA 
    TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21915239 [Map]; Strand: c
      • AT5G53980.1 - [+] show detail - homeobox protein 52
        Distance: 490; Region: intergenic
      • AT5G53990.1 - [+] show detail - UDP-Glycosyltransferase superfamily protein
        Distance: 311; Region: intergenic
    Flanking Genome Sequence: 53-4489-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    GTGTATAAAT GTATAATCTT AATTTCTTCT TAAATTGACG ACATTTTTTA 
    CGAATTTGTA TAATAATGTA ATATAGAGGG AAAGAAAAAA AAACAAATTG 
    TGTGAAAATA ATTTTCTTAT GTAACCTTTA TAAAGATCAC AACTCTTTTT 
    TGTTTGGATC

AT5G53980.1

Model type
Protein coding
Short Description
homeobox protein 52
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
homeobox protein 52 (HB52); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to blue light, regulation of transcription, DNA-dependent, response to absence of light; LOCATED IN: nucleus; EXPRESSED IN: root, flower; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox 3 (TAIR:AT5G15150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53990.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G64910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR