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53-4514-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1556734 [Map]; Strand: c
      • AT3G05410.2 - [+] show detail - Photosystem II reaction center PsbP family protein
        Distance: 0; Region: intron2 (CDS)
      • AT3G05415.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 53-4514-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CACATCCTAC TTTCATCTTT GGTTCTCTGT TTTTCGATTG CCGAAGGCTT 
    GTCTTGTTGA GATAGAGAAG TTGTTCTCAG CTTTTANTGT GGTCTGGTCC 
    TGAACTCAAA GCTAAGAGAG CTAAAGTAGC TTGGTCGGAA GTGTGTAAGC 
    CAAAAAAAGA AGGAGGGCTG GGTTTAAAGA CTTTAAAAGA AACGAATGAG 
    GTTAGTCTTT TGAAGCTTAT ATGGAGAATA CTGTCGGCTC GGGATTCTTT 
    GTGGGTTCAA TGGCTCTCTA AAAACTTGAT ACCGTAAGGA ATCNTTTTGG 
    TCTGTNAAGG GAAAAANNNA GNANGGNATN TTGNNTTNNG NNNNNGGNGG 
    GNNNNNCNCG GNAANAANNN NNTNNANNNN GNTNNNNNGN AANAAAAAAA 
    AGAGAGNNNG GNNGNGNGNA NNNNNAANNC CCNNNNAAAA AAANNGGGGG 
    GGNNNNGGGN GAGNNCCCCC CNANCTNTTN AGGGCCCNGG GNANGAANAA 
    AAAAAANCNG GGCGGNGNAN CACACGGCCC CCNNAGGGGG GNGGGATTAA 
    CAGGGGGACC ANNNNCCGCC CCCCCNNNGA NGGGGGGTTN TANTTNNNCC 
    CCCCCCCCCC CCCCCCCAAG AGGNGNTANN ANAAANNNGN NNNCNCCCNC 
    CCNNNNNNNN NANNNNNNAN NAANNNCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19613376 [Map]; Strand: w
      • AT1G52660.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -99; Region: promoter
    Flanking Genome Sequence: 53-4514-1 - 3-prime edge 
    AATGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTGGTGNNGT GACCGNGGCN GGCGAATCCA ANGTAGGNTA ACTAAGCTNA 
    GANCCCTACT TTAGACATGA GCTTCCTGGT GTGTAAGNAT GGTATTGCTN 
    ANGANNTTGG CGATTGTCGA AGTGCCTTAC ACNTGTTGGA GATGAAACTN 
    ANCACTACCT TGNCGCCAAT TACGCCATCA GNNACCANNN CNNNNGACAC 
    GTTTGCGTCC TGTATNCGTC GGNGNAANTA TTTATNCNAT NCATTGATCA 
    CCCNNANGTC TNATGNGTTA TCATGTTATG TTAACTCTGA CATCTTTGTA 
    AATCTTACTT ACAAGTTACA AGTTACTTAC AATCCTGAAN AAGACAGATT 
    ACAGATATAT ATCTTTGATG TGCAACTTAA TTTGTANTCT GTCTTTTTTA 
    ATTAGTCCAA GATATACCTT TGATCATCTC CATTTCCTTT CCTCGGAATC 
    CTTTGATCTG TAACTTCTTC ACTGGAAAAG ATTTATAACA ACCTTTGTCC 
    TCGNGGAAAA TTGAAAATTC AGTCACAAGC TTTCCCTNAT ATCTTCNTCA 
    CATCNNGTAA GAGACCCTGA AAACNGAGAG ACCGCCTAAA TGACATNTNT 
    TTTNNNNNNA ANAANNNTNT TNGNNNNNNN NNTTTNTNAN AAANCCCNNN 
    AA

AT1G52660.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15700.1); Has 8463 Blast hits to 8404 proteins in 284 species: Archae - 3; Bacteria - 77; Metazoa - 3; Fungi - 0; Plants - 8374; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05410.2

Model type
Protein coding
Short Description
Photosystem II reaction center PsbP family protein
Computational Description
Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: oxygen evolving complex, extrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 355 Blast hits to 355 proteins in 83 species: Archae - 0; Bacteria - 114; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05415.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.0e-48 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR