1. Home
  2. Mutant Lines
  3. 53-4595-1

53-4595-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23143474 [Map]; Strand: c
      • AT5G57126.1 - [+] show detail - transposable element gene
        Distance: -4068; Region: intergenic
      • AT5G57130.1 - [+] show detail - Clp amino terminal domain-containing protein
        Distance: -1506; Region: intergenic
    Flanking Genome Sequence: 53-4595-1 - 5-prime edge 
    ATATTTTGTA TGTTTCCAAA AAATTCTTAA TATTGATTGA TTTCATGAAA 
    TAAAGAAACT TTAAAAGATT TTGATTCAAA AAGCGGCTAA GGGGACCAAG 
    ATTAAAATGG TTGCCCGCGG ATATCGCTCG ACCNAGCNCG GNCCNGNNAC 
    NACCCGCNCN GN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23143590 [Map]; Strand: c
      • AT5G57126.1 - [+] show detail - transposable element gene
        Distance: -4184; Region: intergenic
      • AT5G57130.1 - [+] show detail - Clp amino terminal domain-containing protein
        Distance: -1390; Region: intergenic
    Flanking Genome Sequence: 53-4595-1 - 3-prime edge 
    CAAAATATTT ATAGTTACAG TAGTTAGTTC GTCATTACCA ATATGCAAAG 
    TTCGAAACAT GTATTAACAA AGATGATTCT AAAGCTAATT TTGGGCGACA 
    TTCTAAGTTT TTGCTTCTTT TTATAGTTCT TTTAGTTAGT GGGGAAAAAG 
    AAGTATTAAA GTGGGTTGTT GGGATTTTTA TGGTAAATAA CATTGTTGGG 
    AATTTTTGTA TCAGACAACT CAAAAATATA TTCCCTCTGT TTCTTAAGTA 
    CTATATGTTT TTGTGATTTT TGCACAATTT AAGTAATTAT TTGCAATACC 
    AAATTAAGTT TCAATTTATT AATTGATTAT TATAAGTTTA TAACTAAGAT 
    TTACATTAAA TTGAATTTAA TAGGTATGAG TAAGAAAATG AAATATTACT 
    GTCACAAAAA TAAATCTTAA CCCTTTTTTG TTTGTACCGA ACACATTTCA 
    TTTTGTTTTC CTTCTTCCTT TACTTCTTCT CTTTATGCAA TTCTTGAGGA 
    TCGTTCTCGT CACACGTTAG CACTTAGCCT TAGCAGACCA GAGGAGCTAC 
    AAGAGTTTTT TTTTGACAAA TACCTTTCAC TTAAGACCAA AATTGATTGA 
    AGTTTATATA AAATAATAAA TGATTATGTG GTATAAACAA AAGGAGGGAG 
    AGATGAGACA GAAGGTTGCT TTTGCAGTAT TCCGGGAATG CAATGCTGTC 
    TCTCTCCGAG GATTGGCGTG AGT

AT5G57126.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 6.2e-282 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G57130.1

Model type
Protein coding
Short Description
Clp amino terminal domain-containing protein
Computational Description
Clp amino terminal domain-containing protein; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G29920.1); Has 283 Blast hits to 240 proteins in 33 species: Archae - 2; Bacteria - 10; Metazoa - 3; Fungi - 0; Plants - 262; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR