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Mutant Lines
54-0014-1

54-0014-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 357281 [Map]; Strand: w
  - AT4G00840.1 - [+] show detail - DHHC-type zinc finger family protein
    Distance: -2; Region: promoter
  - AT4G00850.1 - [+] show detail - GRF1-interacting factor 3
    Distance: -270; Region: promoter
Flanking Genome Sequence: 54-0014-1 - 5-prime edge
```
GTTCGGAGGA CAACGACGAA TCGCCGTCGT GGAGCTGATA TTGATACAGA 
TTTAAAGTAA CCTTCTTCTT GACACAGAAG CT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 357165 [Map]; Strand: w
- AT4G00840.1 - [+] show detail - DHHC-type zinc finger family protein
  Distance: 0; Region: exon1 (5UTR)
- AT4G00850.1 - [+] show detail - GRF1-interacting factor 3
  Distance: -386; Region: promoter

CTCCGAACCA AGCAAACTCC GATCCCTCAC CGTGGCTCCG GATGTTTTAC 
GGCGGTTGTT CCCGGCTCGG ACTCGAAGAA TTGGCCGGAT TCTCCCTTTG 
ACCAGGCTGG AGATGAACCT TTTCCGGTTC TGCTCCGGTC TGAAAGTCCT 
CGGCTATTTC ATGATCCTTC TTGTCGTCGC CGTCGTTGGT GTATCTTACT 
ACGCCGTNGT AGTTAGCACA TGGTGGCCGA TCTTGATCCG CGGAGACCAT 
GGAGCTTTAT CCGCCCTCGC TGCCTTAATC ATCTTTGTTT TCCATTTCCT 
GGTAATTTCC AAGTCTCATA ATTTCAGATT AGGTTTTGTT TCTGGAATTG 
TAAGTCTAGG TTTTCTGCTA CTTAACCCCT AAACCTTAAA CTTAGGGATG 
TGGCATGAAA CTTATGTAGC CAAGAGAATG AGAAATGCAA TGTAGTTATG 
AAGCATGAAG CAGTGTAGAT ACATAATCAT TGTTTAGACC ATTGATTGTT 
AGTAAATGTT TAGGCTCCCT GAGTTTAGGT TTACAATTAT ACTTCTGATT 
TGCTTGGTTC TTTGCAGCTG ATAATGCTGT TGTGGAGCTA CTTCACAACA 
GTTTTTACAG ACCCAGGTTC TGTTCCTGAG CATTTCANAA GAGAAATGGG 
AGGTGGTGAC AGTTTGGAGG CTGGTACTTC GACAGATCAA GGAGCTTTTG 
GCTCTTTANG TT

AT4G00840.1

Model type: Protein coding
Short Description: DHHC-type zinc finger family protein
Computational Description: DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G60800.1); Has 5117 Blast hits to 5115 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2189; Fungi - 766; Plants - 830; Viruses - 0; Other Eukaryotes - 1332 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00850.1

Model type: Protein coding
Short Description: GRF1-interacting factor 3
Curator Summary: Arabidopsis thaliana GRF1-interacting factor 3 (GIF3) mRNA
Computational Description: GRF1-interacting factor 3 (GIF3); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 2 (TAIR:AT1G01160.1); Has 414 Blast hits to 414 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 279; Fungi - 27; Plants - 81; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR