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54-0023-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6098715 [Map]; Strand: w
      • AT2G14370.1 - [+] show detail - transposable element gene
        Distance: 1585; Region: intergenic
      • AT2G14378.1 - [+] show detail - Protein of unknown function (DUF1278)
        Distance: 6154; Region: intergenic
    Flanking Genome Sequence: 54-0023-1 - 3-prime edge 
    ATGCCCATTG ACATCTGTGC ACTAAGCTCT CCAACATGAA GCTCAAGACT 
    ACTCTATGGT TTCTCCCTAG GACTTAAGTG GGACTTTCTT CTTGTGTTAT 
    GTTCTCTTTG AAAAGCT

AT2G14370.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.2e-116 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR

AT2G14378.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1278)
Curator Summary
Encodes a ECA1 gametogenesis related family protein
Computational Description
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT4G35165.1); Has 173 Blast hits to 163 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR