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54-0047-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28553633 [Map]; Strand: w
      • AT1G76090.1 - [+] show detail - sterol methyltransferase 3
        Distance: -1852; Region: intergenic
      • AT1G76100.1 - [+] show detail - plastocyanin 1
        Distance: 354; Region: intergenic
    Flanking Genome Sequence: 54-0047-1 - 5-prime edge 
    TTCAACGTGG AACTCTCTAC GAGAAAGAGA GTCTCGGTTA CATATCAGCT 
    ATATATGAGT GTGCTGATCT GTGTTATTTG TCTCTTTCCC TGTTCCTTTA 
    GCAAAAGATC AAATCAAACC AGGCGACCGA AATAGACATT TTTCCCTGCC 
    TGACCCTTGG TAATGGATCC ATGATCCGTC TTCATTTTTG CTATTTAAAA 
    TCAATAATGA TTTCATCACG TGATATTCTC TCTTTCTCGT GATTTGTTAA 
    TGCAATTTTT TTGGGTGGGT CAGTAGTGGT TGCGTAAGCA CCTAGCTAAA 
    CCTGTTTCCT ATATTTCCCC AAAAAACATG AGTCGTTAGG CCCAATTTGT 
    GATATATAGG CGTGCTGGGC CTCTAAAAGA CTCAAACGTT GGGACCAAAG 
    TAAGGCAAGT AAACCCAACG CAGATACACC TAAAACAAAC TTTATTCAAA 
    CTAAAAGCTC TTTACACGGA CACAGAGAAA GGTTATCGGA TTGTATGACC 
    GTGACTTAAA ATGTACAAAA GAGCCACTGA AACCAGTAAC TTATGATAGT 
    AAACATTATA TGATCCTCTT TATCAATCCA ACATTCTCTT CNAATTAGAT 
    TTATAAATCA TGAATATGTA AGCTCCTACT CGAACAGAGA ATATCTAGAC 
    AATTTACTTG ACGGNGAGTT TCCAACCNTN CCANCNCCCT GGNGCGGCNC 
    ACAATANAAA CCG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28553517 [Map]; Strand: w
      • AT1G76090.1 - [+] show detail - sterol methyltransferase 3
        Distance: -1736; Region: intergenic
      • AT1G76100.1 - [+] show detail - plastocyanin 1
        Distance: 470; Region: intergenic
    Flanking Genome Sequence: 54-0047-1 - 3-prime edge 
    ACGTTGAATA TGATTCCCAT ATCTTGACAA GTCTAGTTGC AATTCTGAAT 
    TAATTAATAT GAATAGTTTA CATTGGTAAT GCGAAGAAAA AGCTCTCAAA 
    CAGTTGTCAC ATTTTGTGTT CTAGAGAAAA GCACAAAGTG ATTATTAACA 
    TATTTGAAGG TTTCATCTCT CTTATCTGTG TGTATATCAG TTATATATAA 
    TGTTTAAAAT GTATAAATCA TGATTTCGAC AAGCTTCAAA AATAGTTTCT 
    TCGAATATAA CAGCTGGAGA TGGATTGTCG TATGTGCATT ATGGTCTACA 
    GTTGGAATTA TTAGAGTAAA TTATATATCG GGTTCATAAA ATACGATAAA 
    ATTGGACCAA TCTATAACGA ATTTGTNCTC ACTCACACAT TAATTATGTC 
    GNGTGAGCNA ATAGATCACG TGAGTGATGN TATNAAAACN AGCTGTNATA 
    TGGNGNGATC NANAATCNNG NTNACNTNNA NACNGATTGN TNACNCCTCG 
    GNNACNTGGA ACCANCNTNT GAGNNNTGCC NGNGAACCAC CCNNNTNCCC 
    NNAAANAAAA NNTNNNTTNN NCNNNNNNNG GNNCCCCNNN GGCCCCC

AT1G76090.1

Model type
Protein coding
Short Description
sterol methyltransferase 3
Curator Summary
Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.
Computational Description
sterol methyltransferase 3 (SMT3); CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 2 (TAIR:AT1G20330.1); Has 10191 Blast hits to 10184 proteins in 2043 species: Archae - 312; Bacteria - 6392; Metazoa - 125; Fungi - 424; Plants - 648; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76100.1

Model type
Protein coding
Short Description
plastocyanin 1
Curator Summary
One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions.
Computational Description
plastocyanin 1 (PETE1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G20340.1); Has 1305 Blast hits to 1299 proteins in 244 species: Archae - 140; Bacteria - 448; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 5; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR