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54-0047-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28553633 [Map]; Strand: w
      • AT1G76090.1 - [+] show detail - sterol methyltransferase 3
        Distance: -1852; Region: intergenic
      • AT1G76100.1 - [+] show detail - plastocyanin 1
        Distance: 354; Region: intergenic
    Flanking Genome Sequence: 54-0047-3 - 5-prime edge 
    TTCAACGTGG AACTCTCTAC GAGAAAGANA GTCTCGGTTA CATATCANCT 
    ATATATGAGT GTGCTGATCT GTGTNATTTG TCTCTTTCCC TGTNCCTTTA 
    GCAAAAGATC AAATCAAACC AGGCGACCGA AATANACATT TTTCCCTGCC 
    TGACCCTTGG TAATGGATCC ATGATCCGTC TTCATTTTTG CTATTTAAAA 
    TCAATAATGA TTTCATCACG TGATATTCTC TCTTTCTCGT GATTTGTTAA 
    TGCAATTTTT TTGGGTGGGT CAGTAATGGT TGCGTAAGCA CCTANCTAAA 
    CCTGTTTCCT ATATTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28553518 [Map]; Strand: w
      • AT1G76090.1 - [+] show detail - sterol methyltransferase 3
        Distance: -1737; Region: intergenic
      • AT1G76100.1 - [+] show detail - plastocyanin 1
        Distance: 469; Region: intergenic
    Flanking Genome Sequence: 54-0047-3 - 3-prime edge 
    ACGTGTGAAT GGGATTCCCA NANCTTGNCA AGTCTANTTG CAATTCTGAA 
    TTAATTAATA TGAATAGTTT ACATTGGTAA TGCGAAGAAA AAGCTCTCAA 
    ACAGTTGTCA CATTTTGTGT TCTAGAGAAG AAGCACAAAG TGATTATTAA 
    CATATTTGAA GGTTTCATCT CTCTTATCTG TGTGTATATC AGTTATATAT 
    AATGTTTAAA ATGTATAAAT CATGATTTCG ACAAGCTTCA AAAATAGTTT 
    CTTCGAATAT AACAGCTGGA GATGGATTGT CGTATGTGCA TTATGGTCTA 
    CAGTTGGAAT TATTAGAGTA AATTATATAT CGGGTTCATA AAATACGATA 
    AAATTGGACC AATCTATAAC GAATTTGTCC TCACTCACAC ATTAATTATG 
    TCGTGTGAGC AAATAGATCA CGTGAGTGAT GT

AT1G76090.1

Model type
Protein coding
Short Description
sterol methyltransferase 3
Curator Summary
Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway.
Computational Description
sterol methyltransferase 3 (SMT3); CONTAINS InterPro DOMAIN/s: Sterol methyltransferase C-terminal (InterPro:IPR013705), Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: sterol methyltransferase 2 (TAIR:AT1G20330.1); Has 10191 Blast hits to 10184 proteins in 2043 species: Archae - 312; Bacteria - 6392; Metazoa - 125; Fungi - 424; Plants - 648; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76100.1

Model type
Protein coding
Short Description
plastocyanin 1
Curator Summary
One of two Arabidopsis plastocyanin genes. Expressed at 1/10th level of PETE2. Does not respond to increased copper levels and is thought to be the isoform that participates in electron transport under copper-limiting conditions.
Computational Description
plastocyanin 1 (PETE1); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT1G20340.1); Has 1305 Blast hits to 1299 proteins in 244 species: Archae - 140; Bacteria - 448; Metazoa - 0; Fungi - 0; Plants - 204; Viruses - 5; Other Eukaryotes - 508 (source: NCBI BLink).
Link
InterPro Scan - TAIR