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Mutant Lines
54-0165-1

54-0165-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 17902655 [Map]; Strand: w
  - AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -495; Region: promoter
  - AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -495; Region: promoter
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 54-0165-1 - 5-prime edge
```
NNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCT ACTCGAGTGC CTCTCCAGTC TTGGAAGGAA 
TCCTCGTGAA GTTGCTTCCG CCATTACCAA ATTTCCTCCA ATACTCTCTC 
ATAGCAGTGG AGGAGAAACT CTGTCCCCTT CTTGCTTTCT TTCAAGCGTT 
GGGTGTGCCT GAGACTCAAC TTGGCAAAAT GATACTTTTT AACCCAAGGC 
TTATCAGCTA CAGCATCGAC ACCAAGCTGA CAGTGATCGT CAGCTTTCTT 
GCTAGCCTTG GCCTTGATCA AGATGGGATG ATTGGCAAAG TTCTGGTGAA 
GAACCCATTT CTTATGGGGT ACAGTGTTGA TAAAAGGTTA CGGCCTACCA 
CTGAATT
```
3 prime edge [+] show sequence
1. Chromosome: 4; Position: 17902657 [Map]; Strand: w
  - AT4G38150.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -497; Region: promoter
  - AT4G38150.2 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: -497; Region: promoter
  - AT4G38160.3 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G38160.1 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
  - AT4G38160.2 - [+] show detail - Mitochondrial transcription termination factor family protein
    Distance: 0; Region: exon2 (CDS)
Flanking Genome Sequence: 54-0165-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
TCGACCATGG GGATGAGTCT CTCATCGAGG CGTAAAGTCA GGATTTTGGG 
GCATCGGGAG ACGATGTAAG GGAGTTTTCT CTCTTGGATA CCAACAATGT 
TACTCAGGTA GTCCCAGTTT TCTGATGCCA CATCGCTTTG AGCCTTTTCC 
AACTGTTTGC ATTTTCTCAA CATCTTGTCG ATACTCGGAT CATCGAAACC 
TTTGTCCCTG AAGAACCACA TGATGCNTGC TCGTATTTGT CACCTCCATA 
TAAACGCCAC TACAACACAC ACAATTTTGC TTAACTTAGA AATGATTCGA 
GCTTGAACAA GGAAGTAGAG AGGAATTTAC CTTGGAGGAG AGCCTTTCCG 
GCTATCCAAT TGAACTGAAA GTGAGAAGCT
```

AT4G38150.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38150.2

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.2

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38160.3

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: pigment defective 191 (pde191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1).
Link: InterPro Scan - TAIR