1. Home
  2. Mutant Lines
  3. 54-0182-2

54-0182-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19125989 [Map]; Strand: w
      • AT2G46560.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: -133; Region: promoter
      • AT2G46570.1 - [+] show detail - laccase 6
        Distance: -883; Region: promoter
    Flanking Genome Sequence: 54-0182-2 - 3-prime edge 
    CAACACTTCT TCTTAGCAGC AACACTTCTT ATTTGCGGAT CTCGTGACAA 
    TTTATTTACG TTTTGGCTAC AATAATCAAA ATTCACAATT TCTATCTTCA 
    CAATACACAT TAAATTAGGG AATTATAATT TTTACATCAT AAAAATACAC 
    ATNCTTTTTT GANGCCCAAT GAGATATGAG CCTAAATGAG ATATAGGATC 
    CAGCTCAAAC CTTCTGGCTT GGAACGAGGG TCCGGTGATC CTCGTACTGG 
    TAAGTTGTGT AGCACAATCG GAAAAAAATA GTTGTGGTCT AAGATTTGAG 
    TTTTCCGTTA AAACCAGTGA TTATGCCGGA GACGAGTCAC GTCGCGATCT 
    CACTGGTCAC AGATCGGATC GATCAT

AT2G46560.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), RAVE protein 1 C-terminal (InterPro:IPR022033), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 2273 Blast hits to 1588 proteins in 291 species: Archae - 0; Bacteria - 657; Metazoa - 469; Fungi - 690; Plants - 137; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G46570.1

Model type
Protein coding
Short Description
laccase 6
Curator Summary
putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).
Computational Description
laccase 6 (LAC6); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: shoot, hypocotyl, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 9565 Blast hits to 7786 proteins in 1266 species: Archae - 28; Bacteria - 3648; Metazoa - 481; Fungi - 3482; Plants - 1556; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink).
Link
InterPro Scan - TAIR