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54-0190-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24378718 [Map]; Strand: c
      • AT5G60660.1 - [+] show detail - plasma membrane intrinsic protein 2;4
        Distance: -1729; Region: intergenic
      • AT5G60670.1 - [+] show detail - Ribosomal protein L11 family protein
        Distance: 2192; Region: intergenic
    Flanking Genome Sequence: 54-0190-1 - 3-prime edge 
    ATTATAGAAA GTCAAAACTA AGAAGTTGGA TTTAATAATA ATAATAAGGA 
    AAAGAAAAAT AATGAGGAGG AGATGATAAG AATGAGATTC TTGACATGCG 
    AACAACGTTG GAGCTCTTAT TATATGTTGT CTCTGCTTCN CCNCT

AT5G60660.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 2;4
Curator Summary
A member of the plasma membrane intrinsic protein subfamily PIP2.When expressed in yeast cells can conduct hydrogen peroxide into those cells.
Computational Description
plasma membrane intrinsic protein 2;4 (PIP2;4); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, hydrogen peroxide transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60670.1

Model type
Protein coding
Short Description
Ribosomal protein L11 family protein
Computational Description
Ribosomal protein L11 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11, C-terminal domain (InterPro:IPR020783), Ribosomal protein L11, N-terminal domain (InterPro:IPR020784), Ribosomal protein L11, conserved site (InterPro:IPR020785), Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: Ribosomal protein L11 family protein (TAIR:AT3G53430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR