Home
Mutant Lines
54-0209-1

54-0209-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 19126114 [Map]; Strand: w
  - AT2G46560.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
    Distance: -258; Region: promoter
  - AT2G46570.1 - [+] show detail - laccase 6
    Distance: -758; Region: promoter
Flanking Genome Sequence: 54-0209-1 - 5-prime edge
```
GACCCGCAAA TAATAAGGAA CACACTTGTG TTGGCTTTGC TAACTATGAT 
GACTGTTGTG TTGTTTAATG GAAAAAAAAC ACGTAAATAT CAGAAATTTA 
CGTAATTAAA AATCAAATAA GAAATTTACG TAAATNTNTT TNTCAGTGGT 
CTTACAATAT AAGGA
```

3 prime edge [+] show sequence

Chromosome: 5; Position: 26348334 [Map]; Strand: w
- AT5G65860.1 - [+] show detail - ankyrin repeat family protein
  Distance: 0; Region: exon1 (CDS)
- AT5G65860.2 - [+] show detail - ankyrin repeat family protein
  Distance: 0; Region: exon2 (CDS)

ACAATCGCAA GAAACCNAAC AAAGAACGAA TATTCTAATC AAGAATATCT 
TCAAGACAGA GTTAGTTTCA GTGAAGACAA GTTAATGGAT ANTGAAAGCA 
AAGGTGTGAT GATGGCTTGG GAAAAACCAT TAATGGAAGC TCACGCTAAA 
GCTATTTGTC TNTTTNGTGG TCACATNCTN AACGTNGGTT TCGGTATGGG 
ACTTGTCGAT ACAGCGATTC AACGATACAA TCCGGTTAAA CACACGATCA 
TTGAAGCTCA TTCTGAAGTT TATAAGCGTA TGATTGAATC TGGTTGGGGA 
GAGAAAGAGA ATGTGAAGAT TGTTTTTGGA AGATGGCAAG ATGTTCTTGA 
TAAGCTTGAT GATAATTCTT TTGATG

AT2G46560.1

Model type: Protein coding
Short Description: transducin family protein / WD-40 repeat family protein
Computational Description: transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), RAVE protein 1 C-terminal (InterPro:IPR022033), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 2273 Blast hits to 1588 proteins in 291 species: Archae - 0; Bacteria - 657; Metazoa - 469; Fungi - 690; Plants - 137; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G46570.1

Model type: Protein coding
Short Description: laccase 6
Curator Summary: putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).
Computational Description: laccase 6 (LAC6); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: shoot, hypocotyl, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 9565 Blast hits to 7786 proteins in 1266 species: Archae - 28; Bacteria - 3648; Metazoa - 481; Fungi - 3482; Plants - 1556; Viruses - 0; Other Eukaryotes - 370 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G65860.1

Model type: Protein coding
Short Description: ankyrin repeat family protein
Computational Description: ankyrin repeat family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Arginine N-methyltransferase 2 (InterPro:IPR017408), Methyltransferase type 11 (InterPro:IPR013216), Ankyrin repeat (InterPro:IPR002110); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G65860.2

Model type: Protein coding
Short Description: ankyrin repeat family protein
Computational Description: ankyrin repeat family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Arginine N-methyltransferase 2 (InterPro:IPR017408), Methyltransferase type 11 (InterPro:IPR013216), Ankyrin repeat (InterPro:IPR002110); Has 14669 Blast hits to 7820 proteins in 738 species: Archae - 65; Bacteria - 1760; Metazoa - 7798; Fungi - 1170; Plants - 439; Viruses - 38; Other Eukaryotes - 3399 (source: NCBI BLink).
Link: InterPro Scan - TAIR