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54-0214-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 135515 [Map]; Strand: c
      • AT5G01330.1 - [+] show detail - pyruvate decarboxylase-3
        Distance: -653; Region: promoter
      • AT5G01335.1 - [+] show detail - transposable element gene
        Distance: -316; Region: promoter
    Flanking Genome Sequence: 54-0214-1 - 5-prime edge 
    TGTTTAACAA CATGTTATTA ATTTTTTATT TTTGGTTTTA ATGTTAAGAA 
    AACATAACAA CTTGTTCTCA CGCGTTAACA TGTGCTCCCC ACGTTAACAC 
    ATTAATAATC GATTTAAATA TTAATGAAAT AGCAATGTTC CATCACCATG 
    GAGACTTTTT GTTGTTCATG TGATACTTTA TAATGAGCGT CGTAAGACAT 
    AGATAAGAGT GTAATTTATG AGAACAAGAA CAATTTGTTC CCAAATCCCA 
    AGTAACAGAA TTAGTTTGAA TCGTTTAACT ATATAAGAAG CAAGGAACAA 
    AAAGACTCGC AATGTTGTTA AATATGGCCA CATACACATG TGAAGTATTA 
    TGGTATGTTT CGCCATGCAT AAAAAACTTT AAACCAAGAT TGTGTGGGAT 
    CACGATGTAA CTCTACCCTT GCGCGCATCA CATGTAAATT ATTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 141197 [Map]; Strand: c
      • AT5G01335.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-0214-1 - 3-prime edge 
    GTTAAACAAC AATGTATATT TCAACGTGTA ATTTGTTTTT TGTCAGACAT 
    TCTAACGTGT TTAGTGATTA CCTTGAAAAC TATCTCTTCG AATCATTGTT 
    AATATCTCAA ACCAACAGCG TCGCCGGTAA TATATTCCCA ACATTCATCT 
    ACTTGATAGT CTTGATTGAT CAATATCATA CAACTACTTT TTCCCAAAAA 
    GTATATCATT TAATTTAAGT CATATGACTA CTACTAGAAC GTTTTGTCGT 
    TAAACGAGCG CTAGTTTCCA AATCGTAAAA CCATTACGAA CTTATGTGAT 
    ATAAGTGAAA ATGTGAAATA ACTGTTTCAT TTCGTCAAGT AGACACGTTA 
    AAGTGTTGAA CATTTTGGGT AACAGAGAAC TATTTTTGTC CATTATAATG 
    ATCGCATTTG ACGTCTCATT ATATGTGTGA CGTAGGTGTC AAGAACCCTT 
    TGACTATACC TGATTTGAGA ACAATTTAGG CCCAAATGAA AAATTAGCCA 
    TAATTTTGCA GCATCAGCCC AACTAAGACT ATTCTCAGAC AGAAGGAAAT 
    TTTGTTCTCA AATCAAATTT TTCCACAAAA ATTCATAACC CTAACGTTTC 
    ATGATTATTG GACAGCCTAT GTCGAAATGA GTTCGGACTA TTAACAGACG 
    GGCCTAAATG ATTTTAGCCC ATATTAATTA TTTCAGTTTT AGGCCTGAAA 
    CAGACC

AT5G01330.1

Model type
Protein coding
Short Description
pyruvate decarboxylase-3
Curator Summary
pyruvate decarboxylase
Computational Description
pyruvate decarboxylase-3 (PDC3); FUNCTIONS IN: in 6 functions; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G01320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01335.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 3.4e-29 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR