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54-0231-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9710011 [Map]; Strand: w
      • AT4G17380.1 - [+] show detail - MUTS-like protein 4
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 54-0231-1 - 5-prime edge 
    ACGANTACCT TGATACTATT CATGTTTGTC TATTAAATTA TATAGAATGT 
    TAGCATCAAA ACTGTTTATC ATTCTGATTC ATTGTTTCCT TGATTTGATG 
    ACGGTAGTGT TGANAATCTG GAACTCATTG ATCCATTCCA CTNNNCNCTT 
    TTGGGCACTA GCAACAAAAA GAGGAGTTTG TTCCAGATGT TCAAGACAAC 
    AAAAACAGCT GGCGGGTATC TGGAAGCGCA TATGTTTGAG TTGAAATTAC 
    TAATTAATCT TTGTCTCTTG TGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26439351 [Map]; Strand: c
      • AT5G66140.1 - [+] show detail - proteasome alpha subunit D2
        Distance: -587; Region: promoter
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon24 (CDS)
    Flanking Genome Sequence: 54-0231-1 - 3-prime edge 
    GGCACGTGTN AATGAGCGAG TGTGGTTCTN ACNAGGTTTC CGGAAAACAA 
    CTNCTTCAAC TCAACNTTAG CGATTTTAGA GTAGTCNTNG TCTTCNNNCG 
    CNTGTAAGCA ANGCTCNACA CTCAATTACT GTCATGTATA TCCCAATTCA 
    AGAACNTNTA NCTGTACGTA CCTCGTAGAG ATGAGCCAGG CGAAGAAGGA 
    CGTTCCCGAG ATCCAACTCC TCAAGAGTGA TGAGAGCAAT GTTTTGAGGC 
    AAGGTGTAGA GATGATCCAT GG

AT4G17380.1

Model type
Protein coding
Short Description
MUTS-like protein 4
Curator Summary
Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination.
Computational Description
MUTS-like protein 4 (MSH4); FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, synapsis, meiotic prophase I; LOCATED IN: condensed nuclear chromosome; EXPRESSED IN: flower, sporocyte; EXPRESSED DURING: petal differentiation and expansion stage, IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS, core (InterPro:IPR007696); BEST Arabidopsis thaliana protein match is: MUTS homolog 2 (TAIR:AT3G18524.1); Has 13303 Blast hits to 13154 proteins in 2712 species: Archae - 169; Bacteria - 9120; Metazoa - 661; Fungi - 837; Plants - 451; Viruses - 3; Other Eukaryotes - 2062 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66140.1

Model type
Protein coding
Short Description
proteasome alpha subunit D2
Curator Summary
Encodes alpha5 subunit of 20S proteosome complex involved in protein degradation.
Computational Description
proteasome alpha subunit D2 (PAD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, proteasome core complex, alpha-subunit complex, chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit PAD1 (TAIR:AT3G51260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR