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54-0254-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26427560 [Map]; Strand: w
      • AT5G66100.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-0254-1 - 5-prime edge 
    CACAAGTCTT CCAAACGGAG GAGCCACCGG CGTTGTTAGC TTTCTCTTTG 
    GCTGATTCCT TCTTCTTCTT CTCCAATTCT TTTCCTTGGT TTCAGAGTAT 
    AATAATCCCC AGCTTCTTTG ATCCTCTCTC TCTCTCTCTT CCTNTGTTAC 
    ATGATGGCTA CGACGGNGAG TAGTGCCGCT AATTCTGCAT CTCGCTTCTN 
    CATTGATTCC TCTATCTCGC GATCACGTCA CGGNGATTCC TCTCCCTGGN 
    TGNTACCTTC TGATTCCCAT GATCATCCGA CTCTTTCCCT CTCCCANGAC 
    GATCCCTTCT CAGCGCCTTC CGTCTCCCCG CCCACCGGAA ATAACTCTTC 
    CGACTACGAC AATGCTGATA AGAAGCCTCC TCCTGTCTGG AACATGCCTT 
    CTTCTAATAG CTCCTCCGAT GTCGGCCCTG TCATGGGCGC CGCCGAATCC 
    TGGCCTGCTC TCTCTCTTTN TGCTCGCTCT TCTTACATCA AGTCTCCCTC 
    TNTGGATGCT TACAAACCTT TTCCTGATGG ATCATCGTCA TCAATACCGC 
    CTCCCCAGGT CGTTTCTTTN TGCGCTCCGA TTATGTCATT ACAGAATATT 
    AGGGATTCAC CAGTATCTAC CTATTATAGG GCNTGGGGTT TCAAGTTNCA 
    TTTCTCAAGC TCCTTCTTNT GCATGTTTCG AATCCAAAGA NGATAATTTA 
    GTC

AT5G66100.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Computational Description
winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR