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Mutant Lines
54-0349-1

54-0349-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 18741615 [Map]; Strand: c
  - AT3G50500.1 - [+] show detail - SNF1-related protein kinase 2.2
    Distance: 0; Region: exon9 (3UTR)
  - AT3G50500.2 - [+] show detail - SNF1-related protein kinase 2.2
    Distance: 0; Region: exon9 (3UTR)
Flanking Genome Sequence: 54-0349-1 - 5-prime edge
```
TTCTCNGCTT TGGATTACAT ACATATGTAT TGTAATGGAA NATGTAATAT 
ATTTTTATGT ATNTTTCTTT GTTTTAATAA CTATTGGCAC ATTTTATACA 
AATGATATGG TGCTAGATC
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 534133 [Map]; Strand: c
- AT4G01270.1 - [+] show detail - RING/U-box superfamily protein
  Distance: 0; Region: exon7 (CDS)

GNTNNNNNNN NNNNNNTNNN NNNNNNNNNN NNNNNNNTTT NGNNNNNNNC 
TTGNGGNGCC GGAGGGCNNT TCNACCGNGA NAGACCGTTN CCANGCCAGG 
NGCACCACGC CGGCCNANCA GAANAAAANG NNGGCNGTGN NNNNCAAGGA 
CNACGCTTAA AGGGANNANA NNCCNCCTTN GGTNGCAGAN CAGACTCGNT 
TNTANATNTA GATGATGATT ANGNCCCNGA AACCAANNCT TNTGGCATTA 
NAGATTGCAA TACTAANATT GAANAGAAAG GTGATANNNC CATGNTGAAG 
GANNNNANGT NCACCATCAN AAAAGACCCG NCATCATCAN TGTNACCTTN 
CNGCAATGGN ACNNNGGGNG TACATCATNA NTNCAAGTTC TNGAGNGTAN 
NANTAGATTG AANATTGTCC ANTGCNNGNN CCGGAAACAT TTNGCNNTCA 
AGTGGAACAA ATANAAACCT TGGNAGATGG AGCAACCATG GAGAGAGAAA 
CNNAANCANC TCCATCNCTA GGANGTTCTG NTCCGAGGAA AAGATGATCT 
CATATCTNTT GGACCTGATG GTAAACGTGG GTAGAATCAA AAGNGCTGAG 
AATCACCNNC CCCGAGNCCG GCCNAATCNC AGCGNGCCCC TANTANNNNN 
GTCNNCGNTN NNCNGNNCNN GGCNTNNACT GATNGAGACA TGGNNGTNGG 
GNGNTNNTCC GAGCGTTGTG AGNNGNNGNN ATNATATCTN ANCNGGANNG 
NNNNGCNGGC ANCACTNNCA NNTANAANGN TNNGNNANGT NNTTCGCCNG 
GCCGANNANN CCNANNGCNN NGTGCNNNNG NGCGNGNGNG TGGNNGGGNN 
CGTCNNATNN GACNACGANN GTGAGCTGNC CNTGNTCNTG GGCGNGTGTN 
CCGNT

AT3G50500.1

Model type: Protein coding
Short Description: SNF1-related protein kinase 2.2
Curator Summary: encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.
Computational Description: SNF1-related protein kinase 2.2 (SNRK2.2); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like, plant (InterPro:IPR015740); BEST Arabidopsis thaliana protein match is: sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (TAIR:AT5G66880.1); Has 115487 Blast hits to 113731 proteins in 3342 species: Archae - 110; Bacteria - 13353; Metazoa - 42986; Fungi - 12252; Plants - 26670; Viruses - 490; Other Eukaryotes - 19626 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G50500.2

Model type: Protein coding
Short Description: SNF1-related protein kinase 2.2
Curator Summary: encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.
Computational Description: SNF1-related protein kinase 2.2 (SNRK2.2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like, plant (InterPro:IPR015740); BEST Arabidopsis thaliana protein match is: sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (TAIR:AT5G66880.1).
Link: InterPro Scan - TAIR

AT4G01270.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01245.1); Has 5689 Blast hits to 5015 proteins in 477 species: Archae - 145; Bacteria - 387; Metazoa - 2946; Fungi - 366; Plants - 512; Viruses - 10; Other Eukaryotes - 1323 (source: NCBI BLink).
Link: InterPro Scan - TAIR