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54-0394-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24257017 [Map]; Strand: w
      • AT5G60260.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -732; Region: promoter
      • AT5G60270.1 - [+] show detail - Concanavalin A-like lectin protein kinase family protein
        Distance: -728; Region: promoter
    Flanking Genome Sequence: 54-0394-1 - 5-prime edge 
    GCTACTGATG TTATTGAGAC TGTGAACCTT CAATTTCTTA TATGACTTGC 
    AAGTTAGATT ATGAAATTCT ATTAGAATAA ATTTGGTGCA TCCTAGGAAT 
    GTTAGGAATT TGATATGAGG ATTTAATAAT AACATTTATT TGACATAGCC 
    AACAAAGATT AGGAAGGATG GTGGAAATTT CCATGAAGCG TGTGGAAATA 
    AACATTCTGA GTTTTTTAAG GGTGGTGGGA TTGAAAATGG TCATTGTTCA 
    ATAAAGTTGA CCTTGGCATA CTATAATAAT AATATACAAA TTGCATTAAG 
    AAATTATCAA CCTTATAGTA TCTTATATTA TCTTAATGTC AACGAGTTTT 
    TCGAGCCCCA TAATTTAATT TATACAGTCA AACGCAATAG AAGTGTTATC 
    CGTTAAACTT GAGTGTATGA CCAAAATTTT TTAAGTCACA TNCAATCTAG 
    TGGCTCTGCC AACTANAGAC GTTTTTATNC AGAGATTTGT TTAGCACCGT 
    CCTNCTNTGC CAATGATCAA NGGNNCNGAC NTCTNCNCCC TTAAATAATA 
    TTANAAGACC CCNTCNNNCC NANCTTTTTN CCCCCACNCC CTNTCTNANG 
    NAANTGAAAC CCCCTGTNTT GNTNTANANA GGAANANANN CCCCCTTNNN 
    GGNAAAAGGN GTGGNCNTTN NNCTNCCCGG GGGGGNNNNN NATNNNCNTN 
    NNACCCGNNT NCANNGNGNT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24256901 [Map]; Strand: w
      • AT5G60260.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: -616; Region: promoter
      • AT5G60270.1 - [+] show detail - Concanavalin A-like lectin protein kinase family protein
        Distance: -844; Region: promoter
    Flanking Genome Sequence: 54-0394-1 - 3-prime edge 
    TCAGTAGCCT TACCTTTCAT TGGATGAAAA ACACATCTCC TATTTGCTTC 
    GGTTGCTTGT ATTCGAGTTT GCACATTAAC ATATCAGTCT CTTTCTGTCC 
    TGTTCTGCAC CGAGGAGCCC GCAACCAAAT CTATAAGAAG AAAAAAAAAC 
    NCTATGAATA TTGNGAATAA NGGGACCATA TCAGTAACAT CATTATCCAA 
    ACACTTTTTC TTTCTCCATT GTTGCGTCTT GTAATGGCCA TGATCAGGGG 
    AAAACAAAAN AACTNGAAAC GAGTAAAACA CTTAATTTAA GGAAAAATAT 
    CNTANCCAGA TTACANTCTT CCTAATTAGA AGATGCAACA TCANCAAANG 
    ANNCACAATG CAATANGGAG CATGTACTCT ACNGCTACAG NTTCCGCNTA 
    NCNAAAAAAA NGCTTNCCNN GAGGGGGCGA GGNANGGGNT TCNTCTNCCC 
    GTTGNTTGNG TGTCGNGNGN NAANAAAANN NATNNNNAAN AAAAANNNTN 
    GAGACCAAAA GNGGGGNNAT TCNCGNTCCC GGGGNGGNGG GGNGGNNNTN 
    NCCAAAANCC CTTCNTANAA AANAANCGGG NNNAAAAAAN NCCCCCCCGG 
    ANAAAANANC CNCCGGNCTN AAAAAAAAAA AAAAAAGNNT NTAAAAAAAN 
    AANGGGGGGG GGCGNNNNCC CCGGGAGGGN NAGGGGGGNN CNAAAAANGG 
    GGGGGNGGNA ANCCCCNGGA NNAAAATTGG CGGGGGGGNG GGGAATANTT 
    CGNAAAN

AT5G60260.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60270.1

Model type
Protein coding
Short Description
Concanavalin A-like lectin protein kinase family protein
Computational Description
Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT3G45440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR