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54-0495-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3990986 [Map]; Strand: c
      • AT5G12330.3 - [+] show detail - Lateral root primordium (LRP) protein-related
        Distance: -1339; Region: intergenic
      • AT5G12340.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1962; Region: intergenic
    Flanking Genome Sequence: 54-0495-3 - 5-prime edge 
    CATAAAACAA AGTGATTAAC GTAAATTAGC ACAATGATCA GACGGGCTCG 
    AAAGATCTCA AAGTAAAATT TATCAAAACA AAAAAAGACC TCNAAAGAAA 
    AGCAATGATT CGACGGCCGC AAAGCGTGGG GAGGGGCCGA CNAACATTTT 
    ACTGAAAGGG TTNTTTCACN TGCATTGCTC AAACTAATTA TTCTCATTAA 
    AGCTTTTTAT ATAAAACATA AAAGCTACTT TCTTACTTAA TTGCAATTAT 
    ACCACGTAAA AATATGCATA CNAAACCAAT TAAGCTACCC CCCCTAAAGA 
    CTTAATTTGA ATGATTTTAG TAAAATTGGT TACTACTAAA CCCAAACAAA 
    CTTTTCACTA AATATTACCC AGCTTACATA TGCATATGCT TTGTCTG

AT5G12330.3

Model type
Protein coding
Short Description
Lateral root primordium (LRP) protein-related
Curator Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.
Computational Description
LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G12340.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR