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54-0557-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18605022 [Map]; Strand: w
      • AT3G50180.1 - [+] show detail - Plant protein of unknown function (DUF247)
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-0557-3 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACTTTGAGA GAATGTAAGA 
    ATTAGTAGAA TAACTGCAGC AAAGAAAGAC AAATATGCCC AAGGGTTATC 
    TAAGTACTTG AGTATCAAGG TCGTTTTCAA AGAATTCAAC TTCCTGGAGT 
    AGTTTTGTTT ATAACAGCGA TGAACCTCAA TCAACAATAT AATAATGTGT 
    CGCCTTCTTA ATGCGTGATC GTGATAAATT GATTAATGTA AGAACCAACA 
    CATACTCATA CGAGAACTCG TGATGTGTAC ATGGGATATA TAAACACACT 
    CCTAATACTA CATTTTCACA TGTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 3246383 [Map]; Strand: c
      • AT2G07776.2 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
      • AT2G07749.1 - [+] show detail - Mitovirus RNA-dependent RNA polymerase
        Distance: -851; Region: promoter
    2. Chromosome: 2; Position: 3404063 [Map]; Strand: c
    Flanking Genome Sequence: 54-0557-3 - 3-prime edge 
    AAAAAGAANN NNGNNNNNNN NNANNNNNNN ANNNNANNAN NNAAAAATTA 
    AAAANNNNNN TNTGCNGGNA ANAGAAGCNC CTTANCTCGC AGGNNCNTAA 
    GTCAGCGCAA AGGAGAGATA CATCCTTTAA GACTGNGAAG AGAANCCTTG 
    GNTGGACCNA CGGACTACGN GGGAAANACA ANATN

AT2G07663.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT2G07776
Link
InterPro Scan - TAIR

AT2G07749.1

Model type
Protein coding
Short Description
Mitovirus RNA-dependent RNA polymerase
Computational Description
Mitovirus RNA-dependent RNA polymerase; CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, mitoviral (InterPro:IPR008686); BEST Arabidopsis thaliana protein match is: Mitovirus RNA-dependent RNA polymerase (TAIR:ATMG01110.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G07776.2

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G50180.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF247)
Computational Description
Plant protein of unknown function (DUF247); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: petiole, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50120.1); Has 18820 Blast hits to 10177 proteins in 649 species: Archae - 36; Bacteria - 1683; Metazoa - 7662; Fungi - 1574; Plants - 4386; Viruses - 842; Other Eukaryotes - 2637 (source: NCBI BLink).
Link
InterPro Scan - TAIR