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54-0586-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 482990 [Map]; Strand: w
      • AT5G02310.1 - [+] show detail - proteolysis 6
        Distance: 207; Region: intergenic
      • AT5G02320.1 - [+] show detail - myb domain protein 3r-5
        Distance: 133; Region: intergenic
    Flanking Genome Sequence: 54-0586-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATAGT 
    GNNGTGCTCT GATATCACTT CGATGTCCGA AGATGGAAGA ATTTNCAGTG 
    TCTTCGTCNA CTATGTAACA TCATATACTC AAAAGCCCTA AAANNAAAAA 
    AGAATGAACG CGNAAATATC TGNTCCTTTA ANACTAGTTC TCTCGCACNA 
    TNATCATTCT TAANCTGTAA ACAGGACACC ATGTATGTGA ACGATGAAAT 
    NAAGCTACTN GNGAGTGTAC CTACCTACCT ATTTCATTNT AGTTCGGGTG 
    TTANACCAAA GCCGTAGATN CATAGNTCAA GGNTGTGAGG AAGAGAATGA 
    GAATTGTTCT TCTTGCGGTT CTCTTCCCAG CANAGCTANN ATNNTGNGCC 
    NNAANCCNCN NNNGGGNNCT CTGGCTNTGT GTNTTATATA CAGGCNTACC 
    ACTTCGGANG NCTCTAAGAT NCGGATAGCA TGAAAGAGCG NTNCTNCTNN 
    ATNACTCTCA NGATNNNAAN NCANATNNGA CTCNAAANCA NTGNCGAATA 
    CTGATTGTTG CGTTCTCAAG ANNATCAAAC GAGGGCCGGN GACCNGNTTN 
    NCCCTTTNNT AAAATCAAGC GGATCTCGAA CNTCTANTAA ACAGAATCAG 
    TCAAAATTGA GAAAAAGGAA GACTCGTTTG ATCTGAAAAA CTGTCGATCC 
    GGTGATGAAT TTAGGNTTCC GATCATTACC TTGGCGAGAT TAACGTANAA 
    GAACAATGGC TTCTTGGTGT TGGAAACTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 504055 [Map]; Strand: c
      • AT5G02370.1 - [+] show detail - ATP binding microtubule motor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 54-0586-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTANNNNCCG TGACCGACCG TACATCATGG 
    CCTAGATGNC ACCATTCGNN CTNNCNACNA TATNNCNTNN NNCTTGCNTA 
    NACANTTCAT NTANTTGAAT TTNACATCGC GTACNNNNGT TTGGGATCTG 
    TCTNCNANAT ANAAAACANN NAGATCGCTG CTTACGGATG ATNACTATNG 
    NCNGCCNCCT GTNACCGGAC NTTCTACTGN NCNTGANGAN NCCATGNCTG 
    AGACTTGAAG ANGCGTATNN GNGNNGCGTT CANAGGAGGA AAGTTGCACA 
    CACTGGTTTA AATGATGTCT CTAGTAAAAG CCATGGAGTG CTTGTGATCT 
    CAGTGACCTC ACAAGAGCTT GTCACTAGTA AAATNAATCT GATTGATCTC 
    GCAGGTAATT TCTTTACATT TTCCAAGCAT TTGCTANAGT AAAGAGGAGC 
    ATCTACACGT TCTTTTATCT GCAATATTAA CAAAAAAAAC TCTATGGCTT 
    GAGCAGGTAA CGAAGACAAT AGAAGGACAG GCAATGAAGG GATC

AT5G02310.1

Model type
Protein coding
Short Description
proteolysis 6
Curator Summary
Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.
Computational Description
proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02320.1

Model type
Protein coding
Short Description
myb domain protein 3r-5
Curator Summary
Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5).
Computational Description
myb domain protein 3r-5 (MYB3R-5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-3 (TAIR:AT3G09370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G02370.1

Model type
Protein coding
Short Description
ATP binding microtubule motor family protein
Computational Description
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT5G23910.1); Has 10070 Blast hits to 9659 proteins in 326 species: Archae - 0; Bacteria - 33; Metazoa - 4508; Fungi - 1335; Plants - 1813; Viruses - 0; Other Eukaryotes - 2381 (source: NCBI BLink).
Link
InterPro Scan - TAIR