1. Home
  2. Mutant Lines
  3. 54-0684-1

54-0684-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6544474 [Map]; Strand: c
      • AT3G18970.1 - [+] show detail - mitochondrial editing factor 20
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0684-1 - 5-prime edge 
    ATACGAAGAA GACAAGAGTG GCGCAACCCT TTTTATCCAC TCTGTTTTCT 
    AGGGCTTTTC ATGGGTTGGA TTGTGAATGA CTATTTTACC CTCTCTAATT 
    AACTGACCGG TTAATATAAT CAGGTCTGGT TTTCTTAAAC CACTCAATCT 
    GTTTTAACCA TTGGCTTTAA GAAAAAGGCA GAGTAGGATT TATGAAAATT 
    AAAAAGGCCA GCAATATTCT TTGTATTACA TACAAAGTTT GTAAGGTTAC 
    ATGAAGTTGT GATTTATCTT GGCTGATGTT AAAGTGTTGG AAAGAAGCAT 
    AAGGGGGGCA TTGCTCATGC ACCACCAGGT GGTGTGATAA CCCGAGCTGA 
    TTGTTATTGG TACTGGACTT GTCGATATGT ACTCAAAATG CGGCTGCTTA 
    ACATTCACTA GCTTGCTTTC GGCTTATCGT CATATAGGTC TTGTTGAAGA 
    AGGTTTCAAG AGCATGAAGA CAAAATTTGG TGTCACACCG GTTATCCAAC 
    ACTATGGATG CGTAGTAGAT CTTCTTGGTA AAGCAGGGCG GATACAAGTG 
    GCTTATGAGT TTGTATTAGC TATGCCTATA AAGCCTGACG CTATCTTGTT 
    AAGAAGTCTT TGCAATGCCT GCAGCATTTA TGGAGAGACT GTAATGGGTG 
    AAGATATCGT AAAGGCTCTT CTCGAGATAG ATTGAGAGGA GGAGAAGCTA 
    C

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 687631 [Map]; Strand: c
      • AT4G01580.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 804; Region: intergenic
      • AT4G01590.3 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 1182; Region: intergenic
    Flanking Genome Sequence: 54-0684-1 - 3-prime edge 
    CTTCGTATAA CTCATCTTCC TCATAAGTCT CTTTGTTAAT CTCTATCGTT 
    TTTGTTTGTT TTTCGATATT GGGGATAAAA TCCGCCTCCT TGAGTAGCTT 
    TATGAACCCT AAGTTATTTA GGCAATTTCA TACTTATTGG CNTTAGTTAG 
    GAGGCGTAAA TCAATTCTGA TCATTCAATA CTTTTCTGTA TTGTTTTGAT 
    TCGTGGCTTC TTTGGTTTTT GTGGAGAAGC TTNCANNNNG NAGCNGAATN 
    CCNNNTNGGC CCNTTGGATT NGAGTCTGAC NCCACCGAAC CNGTNCGNAG 
    GCCNCTNAGA CCNNATAGCN GNTTANGTTC TTATACTCNN TCATACACAT 
    GACNTGNAGT NATANNCACT NCNAAACACT AACCNNGNCT TTNGNTGCTC 
    CTTNAANNNT CCNACCCNGG CCNGCGANCN CCCCNGNCCC NNNNA

AT3G18970.1

Model type
Protein coding
Short Description
mitochondrial editing factor 20
Curator Summary
Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.
Computational Description
mitochondrial editing factor 20 (MEF20); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G59200.1); Has 30354 Blast hits to 12990 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 18; Plants - 30011; Viruses - 0; Other Eukaryotes - 317 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01580.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G18960.1); Has 469 Blast hits to 437 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 469; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01590.3

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT4G35680.1).
Link
InterPro Scan - TAIR