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54-0699-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14011297 [Map]; Strand: w
      • AT2G33010.1 - [+] show detail - Ubiquitin-associated (UBA) protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-0699-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTC ACAAGAAGTC CTCTCTTATC TCGAGCGCTT 
    CAATTGGGAC GTGGAGAGAG CCGGGGCCCA ATACTATGAG GATCGAGATC 
    AGCAGCGTAC TTCATATGAT CGTACGGAGA TTGATCAGTC GTATTTGCAG 
    CGGTTTCAAG AGGGTTATAC GCCGATGATT GGGGTTTCGA ATTTGGAAGG 
    ATTCTCACAA AATGAAACAT CGACTATGGA TTTGATGCAG CATAGTGCTC 
    CGCCTCTTCC ATCGTTACAT TTACCTTCAG AATCTCAGTT TCATGATTCT 
    GTTGGTTATC AATTAGGGGA CCACTCTTCT TCTTTTTCTG GGTAATTTCC 
    TTTTACTTTT CTTGCGATTT TGTCTATCGA ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30188301 [Map]; Strand: w
      • AT1G80290.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -20; Region: promoter
      • AT1G80290.2 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: -63; Region: promoter
    Flanking Genome Sequence: 54-0699-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACGGCTCA CATAGTCACA TGAAGCTAAA 
    GTGAATCATA AATGCAAGTG GGTGGGTTTT CACTAATAAA GCCCTATAAG 
    AATTATGTAA CTAAGCCCAA TATAGTTTGA AATACAAACA AAGCCCAATA 
    GAGTTTGAAA AACAAACGTA GCCCATACAT CTTTCTTGGT ATGTTACNGG 
    CTTATGGCGT AAAAGAAAAA CATTTAACTA ACAAAACGGG TGAGATAGGT 
    GAGAGGCTAC TACTATATAC GTAGTGTCTA GTTTAGTTAT AAGGCCAGCA 
    CAGCACAACA CACTTATACC GACAAAACAT GTGTGTCATT TAACTCGATG 
    ACAAAGCACA GAAACAAGTT GGTCGTTTAT TTTAAGCAAA GTCATAGGTA 
    CACTGTCTAA TTAATAAACT AATCTTTGAG ATTTCAAGCA CAAAACAAAT 
    ATTCAATATC AACAAGTCAT GACAGAATCC TCTGCCTCGG ATTCCATTGT 
    AGATAGAAAC GGAGACAAAA AACAAACGAA TGAATATTGA GATC

AT1G80290.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
a member of the Glycosyltransferase Family 64 (according to CAZy Database)
Computational Description
Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G55830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80290.2

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
a member of the Glycosyltransferase Family 64 (according to CAZy Database)
Computational Description
Nucleotide-diphospho-sugar transferases superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EXTL2, alpha-1,4-N-acetylhexosaminyltransferase (InterPro:IPR015338); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G55830.1); Has 640 Blast hits to 640 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 485; Fungi - 8; Plants - 102; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G33010.1

Model type
Protein coding
Short Description
Ubiquitin-associated (UBA) protein
Computational Description
Ubiquitin-associated (UBA) protein; CONTAINS InterPro DOMAIN/s: UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein-related (TAIR:AT2G33000.1); Has 31 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR