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54-0712-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27443518 [Map]; Strand: w
      • AT1G72940.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain-containing protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: 54-0712-1 - 5-prime edge 
    CCTAAAATTT GTTAGGTTGT CTAAGTGGTA GATCTGGTTA GGGGGGAAGT 
    GTTAAGAATC AATTGTGAAG CTAAATCTCT TTTCATAGGC AAATAGACAT 
    TAAGTTAAGG GAATGTGGCC TTTGATTAAG TTTGAAGCCT CTCCAAATAA 
    CCTTCCGGTT TTCGTTTGGG ATACCATCCT ATCCTTTTAT TACTTTGTTT 
    TCCTTTCCAC TCGTGTAAAA GCGAGTTCCT TGGCAAAGAG TTCCGTTTGC 
    TTAATTGTGA TTTTGTATCT TTGGTTTAAT TAATCTTAAA GGAAATTGTG 
    AAAAAAAAGA AGTTAATTTG GTTTTGAAAT ATGAATGTTT TTGTTTTTTT 
    TTGGAGTATT TTGTTTGTAA TTTTGAATAG ACTAACTAAT ACAATATACA 
    ATTTTTCTTT TAAAGTTTTG GGTTTGATGT TTCCATATGC ACAACAAACT 
    TATACCTAAC TAAAGTTCAT AGCTCAAAGT TGGAATCTAA AATGACTAAC 
    AACAAGATAA AACAGAGAAA GGGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27443389 [Map]; Strand: w
      • AT1G72940.1 - [+] show detail - Toll-Interleukin-Resistance (TIR) domain-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-0712-1 - 3-prime edge 
    TAGTAAACCA ACTTGACCGC AGCAGAAATG TCTCTCTTTT TAAAGGCGAA 
    TTGTCGGAAG AGTTCACAAA CTTTCTGGAA TTTCAAAAGC TCCACTTCGT 
    AGACAAGCT

AT1G72940.1

Model type
Protein coding
Short Description
Toll-Interleukin-Resistance (TIR) domain-containing protein
Computational Description
Toll-Interleukin-Resistance (TIR) domain-containing protein; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS class) (TAIR:AT1G72950.1); Has 4863 Blast hits to 4729 proteins in 156 species: Archae - 0; Bacteria - 30; Metazoa - 0; Fungi - 0; Plants - 4833; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR