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54-0729-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26157550 [Map]; Strand: c
      • AT5G65445.1 - [+] show detail - pre-tRNA
        Distance: -280; Region: promoter
      • AT5G65450.1 - [+] show detail - ubiquitin-specific protease 17
        Distance: -313; Region: promoter
    Flanking Genome Sequence: 54-0729-1 - 5-prime edge 
    ATCTGGAGAG ATTAAAGCTA GAGAGAGAGA AAAGAAGAAG AAGAAGAAAT 
    CAGAAAGAAT GGTGTGTTGT TAGAGAGAGA AAGTGAATAG AGAAGAAAGG 
    AGGGAATCAA CNGTGCACNT TGTTTTTTGT CGTTTACCTT TCTTTTTTTT 
    GTCGTCTACT ATTTTCATAT ATGATGAACT GAGCCCAATT ACAAAATCTT 
    AAAGCCCAAT TAGCCCAATA GCATTACAAC AAATCTCTTT AGGTGGTGTT 
    ATTCAATTAT GGAGTTAAAG TCAATTCTTT AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22566450 [Map]; Strand: w
      • AT5G55750.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
        Distance: -429; Region: promoter
      • AT5G55760.1 - [+] show detail - sirtuin 1
        Distance: -772; Region: promoter
    Flanking Genome Sequence: 54-0729-1 - 3-prime edge 
    CTGCCGTNCC GCCGTTTTCT CCCTCATATG ACAGGGTTTA CTATGGATNT 
    AGATGGATTC TATGTGACGT TNTGGAGCNT GCTCAACCAT GAGCTTNTAT 
    TAGATTANNA TCTTGNTCTA TCGANCCGGN TTGANACTCA TCACTCANAG 
    CCATTTTGAA TTACCAN

AT5G55750.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55760.1

Model type
Protein coding
Short Description
sirtuin 1
Curator Summary
Encodes SRT1, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).
Computational Description
sirtuin 1 (SRT1); FUNCTIONS IN: NAD binding, DNA binding, zinc ion binding, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: sirtuin 2 (TAIR:AT5G09230.7); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65445.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Ser (anticodon: GCT)
Link
InterPro Scan - TAIR

AT5G65450.1

Model type
Protein coding
Short Description
ubiquitin-specific protease 17
Curator Summary
Encodes a ubiquitin-specific protease.
Computational Description
ubiquitin-specific protease 17 (UBP17); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 16 (TAIR:AT4G24560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR